View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_54 (Length: 306)
Name: NF12942_low_54
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 26126273 - 26126075
Alignment:
| Q |
21 |
aaggaaaagaaaaaacaagtataccactatctaaattatgtcactacgctagctaccttacttttagcattcttcatcgctttaatattgagttggtaaa |
120 |
Q |
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| T |
26126273 |
aaggaaaagaaaaa-caagtataccactacctaaattatgtcactacactagctaccttacttttagcattcttcatcgctttaatattgagttggtaaa |
26126175 |
T |
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| Q |
121 |
ctaacttttcatgcaactttctacttaaaaggtctaatttctataaatttatctcctaatttacatacaacttttgtctcaagataaattactttttctt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26126174 |
ctaacttttcatgcaactttctacttaaaaggtctaatttcaataaatttatctcctaatttacatacaacttttgtctcaagataaattactttttctt |
26126075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 26128035 - 26127839
Alignment:
| Q |
18 |
gggaaggaaaagaaaaa-acaagtataccactatctaaattatgtcactacgctagctaccttacttttagcattcttcatcgctttaatattgagttgg |
116 |
Q |
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|||||||||||||||| ||| ||||||| ||| |||||||||||||||||||||| |||||||||||||| ||||||| || ||||||||||||||||| |
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| T |
26128035 |
gggaaggaaaagaaaattacatgtatacctctacctaaattatgtcactacgctagttaccttacttttagtattcttcgtcactttaatattgagttgg |
26127936 |
T |
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| Q |
117 |
taaactaacttttcatgcaactttctacttaaaaggtctaatttctataaatttatctcctaatttacatacaacttttgtctcaagataaattactttt |
216 |
Q |
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|||||||||| | |||||||||| ||| ||||||||||||| || ||||| |||| |||||| ||||||||||||||||||||||||||| ||||| |
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| T |
26127935 |
taaactaactctccatgcaacttattacacaaaaggtctaatt--aatgaattt-tctcataattttcatacaacttttgtctcaagataaattcctttt |
26127839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 26125401 - 26125221
Alignment:
| Q |
18 |
gggaaggaaaagaaaaa-acaagtataccactatctaaattatgtcactacgctagctaccttacttttagcattcttcatcgctttaatattgagttgg |
116 |
Q |
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||||||||||||||||| ||||||||| ||||| |||||||||| |||| |||||||| ||||||||||||| |||||| ||||||||||||||||| |
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| T |
26125401 |
gggaaggaaaagaaaaatacaagtatagcactacctaaattatgaaactatgctagctattgtacttttagcattattcatcactttaatattgagttgg |
26125302 |
T |
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| Q |
117 |
taaactaacttttcatgcaactttctacttaaaaggtctaatttctataaatttatctcctaatttacatacaacttttgt |
197 |
Q |
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||| ||||| | ||||||| || ||| |||||| ||||||| || | ||| ||||||||||| | || ||||||||| |
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| T |
26125301 |
taagttaactctctatgcaacattttacacaaaaggcctaatttaaattactttttctcctaattttcgtataacttttgt |
26125221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 26124523 - 26124441
Alignment:
| Q |
25 |
aaaagaaaaa-acaagtataccactatctaaattatgtcactacgctagctaccttacttttagcattcttcatcgctttaat |
106 |
Q |
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|||||||||| |||||||||||| | ||| |||||| || ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26124523 |
aaaagaaaaatacaagtataccattccctatattatgccaatacgcaagctaccttacttttagcattcttcatcgctttaat |
26124441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 26127147 - 26126967
Alignment:
| Q |
26 |
aaagaaaaa-acaagtataccactatctaaattatgtcactacgctagctaccttacttttagcattcttcatcgctttaatattgag-ttggtaaacta |
123 |
Q |
| |
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||||||||| |||||||||| |||| || |||||| ||||||| ||||||| ||| |||||||||||||| || ||||| |||||| |||| ||||| |
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| T |
26127147 |
aaagaaaaatacaagtatacaactacatatattatgccactacgttagctacgttaattttagcattcttcgtcattttaa-attgagtttgggaaactt |
26127049 |
T |
|
| Q |
124 |
acttttcatgcaactttctacttaaaaggtctaatttctat-aaatttatctcctaatttacatacaacttttgtctcaagat |
205 |
Q |
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| T |
26127048 |
attcttcttgcaactttttacacaaaaggtctaattt-tatcaaatttttctgctaactttcacacaacttttgtctcaagat |
26126967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 26126042 - 26126005
Alignment:
| Q |
254 |
tcaagtataagtatttaacttaacattgacataagtga |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
26126042 |
tcaagtataagtatttaacttaacattgacataagtga |
26126005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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