View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12942_low_55 (Length: 304)
Name: NF12942_low_55
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_55 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 48832537 - 48832767
Alignment:
| Q |
18 |
cctttaaccgataaagagtattctcttgtccaaaaaatagtcctacacaaatatcccaaagtagctttccactatattggcctagatgaccctgaaaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48832537 |
cctttaaccgataaagagtattctcttgtccaaaaaatagtcctacacaaatatcccaaagtagctttccactatattggcctagatgaccctgaaaaag |
48832636 |
T |
|
| Q |
118 |
atgctattctcaaatgggaatctttcaaaccaagtgctataactatccctcgtaaagcctttatcattgctatcatcaatggccaaagccatgagatact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48832637 |
atgctattctcaaatgggaatctttcaaaccaagtgctataactatccctcgtaaagcctttatcattgctatcatcaatggccaaagccatgagatact |
48832736 |
T |
|
| Q |
218 |
aatagatttaaggttgaggatcattgtctct |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
48832737 |
aatagatttaaggttgaggatcattgtctct |
48832767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 77 - 284
Target Start/End: Complemental strand, 48818002 - 48817795
Alignment:
| Q |
77 |
agtagctttccactatattggcctagatgaccctgaaaaagatgctattctcaaatgggaatctttcaaaccaagtgctataactatccctcgtaaagcc |
176 |
Q |
| |
|
|||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
48818002 |
agtatctttccactatattggtcttgatgaccctgaaaaagatgctattctcaaatgggaaactttgaaaccaagtgttataactatccctcgtaaagcc |
48817903 |
T |
|
| Q |
177 |
tttatcattgctatcatcaatggccaaagccatgagatactaatagatttaaggttgaggatcattgtctctgacaatgtttacaaagggaatggtttcc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48817902 |
tttatcattgctatcatcaatggccaaaaccatgagatactaatagatttaaggttgaagagaattgtctatgacaatgtttacaaagggaatggtttcc |
48817803 |
T |
|
| Q |
277 |
ctacacta |
284 |
Q |
| |
|
|||||||| |
|
|
| T |
48817802 |
ctacacta |
48817795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 91 - 277
Target Start/End: Original strand, 40844053 - 40844242
Alignment:
| Q |
91 |
atattggcctagatgaccctgaaaaagatgctattctcaaatgggaatctttcaaaccaagtgctataactatccctcgtaaagcctttatcattgctat |
190 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||| |||||| |||||||||||||||||| |||||||||| |
|
|
| T |
40844053 |
atattggcttagatgaccctgaaaaagatgatattctcaaatgggtatcttcgaaaccaagtgttataacaatccctcgtaaagcctttgtcattgctat |
40844152 |
T |
|
| Q |
191 |
catcaat---ggccaaagccatgagatactaatagatttaaggttgaggatcattgtctctgacaatgtttacaaagggaatggtttccc |
277 |
Q |
| |
|
||||||| | | |||||||||||||| |||| ||||||||||||| || ||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
40844153 |
catcaataacgtcgaaagccatgagatagtaattgatttaaggttgaagagcattgtctccgacaatattcacaaagggaatggtttccc |
40844242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 48833103 - 48833156
Alignment:
| Q |
241 |
ttgtctctgacaatgtttacaaagggaatggtttccctacactatctgatgatg |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48833103 |
ttgtctctgacaatgtttacaaagggaatggtttccctacactatctgttgatg |
48833156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 167 - 279
Target Start/End: Complemental strand, 15827836 - 15827724
Alignment:
| Q |
167 |
tcgtaaagcctttatcattgctatcatcaatggccaaagccatgagatactaatagatttaaggttgaggatcattgtctctgacaatgtttacaaaggg |
266 |
Q |
| |
|
||||||| ||||| | ||||||||||||||||| ||||||||||||||| |||| ||| ||||||||| | |||||||||||||||||| |||| || |
|
|
| T |
15827836 |
tcgtaaatcctttgttattgctatcatcaatggacaaagccatgagatagtaattgatataaggttgaaaacaattgtctctgacaatgttcacaaggga |
15827737 |
T |
|
| Q |
267 |
aatggtttcccta |
279 |
Q |
| |
|
||||||| |||| |
|
|
| T |
15827736 |
tatggttttccta |
15827724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 279
Target Start/End: Complemental strand, 48792364 - 48792252
Alignment:
| Q |
167 |
tcgtaaagcctttatcattgctatcatcaatggccaaagccatgagatactaatagatttaaggttgaggatcattgtctctgacaatgtttacaaaggg |
266 |
Q |
| |
|
||||||| | ||| || |||||||||||||||| ||||||||||||||| |||| ||| ||||||||| | |||| ||||||||||||| | || || |
|
|
| T |
48792364 |
tcgtaaatcttttgtccttgctatcatcaatggacaaagccatgagatagtaattgatataaggttgaaaactattgactctgacaatgttcataaggga |
48792265 |
T |
|
| Q |
267 |
aatggtttcccta |
279 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48792264 |
tatggtttcccta |
48792252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 15827926 - 15827881
Alignment:
| Q |
74 |
caaagtagctttccactatattggcctagatgaccctgaaaaagat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
15827926 |
caaagtagctttccactatattggcctagatgaccccgacaaagat |
15827881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 109
Target Start/End: Complemental strand, 48792454 - 48792419
Alignment:
| Q |
74 |
caaagtagctttccactatattggcctagatgaccc |
109 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48792454 |
caaagtagctttccactatattggccttgatgaccc |
48792419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 40844003 - 40844056
Alignment:
| Q |
18 |
cctttaaccgataaagagtattctcttgtccaaaaaatagtcctacacaaatat |
71 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| || |||||| ||||||||| |
|
|
| T |
40844003 |
cctttaaccaaagaagagtattctcttgtccaaacaacagtcctgcacaaatat |
40844056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University