View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_57 (Length: 293)
Name: NF12942_low_57
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 84 - 266
Target Start/End: Original strand, 48723975 - 48724154
Alignment:
| Q |
84 |
ttcttagaaatcgataatttgaaggtttataagataatttgaagaccacttttaggaaagtattatatacactaaaatggaagttttatgaaagtatata |
183 |
Q |
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| T |
48723975 |
ttcttagaaatcgataatttgaaggtttataagataatttgaagaccacttttaggaaagtat---atacactaaaatggaagttttatgaaagtatata |
48724071 |
T |
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| Q |
184 |
tgatactctattaagttaccataaacaacacatacaatgaatgaaaccagattttcgattcaagagcatgacattcattatcc |
266 |
Q |
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| T |
48724072 |
tgatactctattaagttaccataaacaacacatacaatgaatgaaaccagattttcgattcaagagcatggcattcattatcc |
48724154 |
T |
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Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 48723177 - 48723253
Alignment:
| Q |
11 |
cagagagcttagttagattaagtcagaacagtagagcttaactagtcccgtcaaaagacatcgtcaatctatattct |
87 |
Q |
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| T |
48723177 |
cagagagcttagttagattaagtcagaacagtagagcttaactagtcccgtcaaaagacatcgtcaatctatattct |
48723253 |
T |
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