View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12942_low_6 (Length: 711)

Name: NF12942_low_6
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12942_low_6
NF12942_low_6
[»] chr4 (1 HSPs)
chr4 (13-692)||(27338776-27339456)


Alignment Details
Target: chr4 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 13 - 692
Target Start/End: Original strand, 27338776 - 27339456
Alignment:
Q  13 aatatcgctgataagggtggcgcaacttttactcgacccatcaaattttgttagtacaactacatacacannnnnnnn-gaagaaagtacacctacaaac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||         |||||||||||| ||||||||    
T  27338776 aatatcgctgataagggtggcgcaacttttactcgacccatcaaatttttttagtacaactacatacacatttttttttgaagaaagtacaactacaaac 27338875  T
Q  112 acattaataaaaagatgataaatttgtacattttcgaaatggaaatgaataaagatgaaaagggttgataaataagcaatgaatgaatgagaaagtggtg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  27338876 acattaataaaaagatgataaatttgtacattttcgaaatggaaatgaataaaaatgaaaagggtagataaataagcaatgaatgaatgagaaagtggtg 27338975  T
Q  212 ttacttgagaagaagatgaagtttttcctctctttgcaaaccccaacaagatttggcgaagaaagttgagtttgggaatgggaatggaagcgatgataat 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  27338976 ttacttgagaagaagatgaagtttttcctctctttgcaaaccccaacaagatttggcgaagaaagttgaggttgggaatgggaatggaaacgatgataat 27339075  T
Q  312 aggcaatgtagcagcgatccaagacaacctcagcaatgaaacaagaagtgtcttcattatttgatgttgatcattcgacaaaaaagacaagttcatagta 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27339076 aggcaatgtagcagcgatccaagacaacctcagcaatgaaacaagaagtgtcttcattatttgatgttgatcattcgacaaaaaagacaagttcatagta 27339175  T
Q  412 atatgtgaggatatgatacgaggagtggtacttgggagagtgaatgaagaggttaagaatctgatttcattctcatcagaaagagacgtgtggtgtgatg 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27339176 atatgtgaggatatgatacgaggagtggtacttgggagagtgaatgaagaggttaagaatctgatttcattctcatcagaaagagacgtgtggtgtgatg 27339275  T
Q  512 gatgtggatcctctctgattattctacctcttgttcactatatagcattgaatatgtaccatttgattaatcttatgattgggagactgcgaaaagtaaa 611  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27339276 gatgtggatcctctctgattattctacctcttgttcactctatagcattgaatatgtaccatttgattaatcttatgattgggagactgcgaaaagtaag 27339375  T
Q  612 gacgtgtatttggggataaagcggtggaggtggagaaactccagggacgacgtcagtgcatatcttgacggcggcactcgg 692  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27339376 gacgtgtatttggggataaagcggtggaggtggagaaactccagggacgacgtcagtgcatatcttgacggcggcactcgg 27339456  T

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