View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_63 (Length: 274)
Name: NF12942_low_63
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 136 - 257
Target Start/End: Original strand, 26597464 - 26597585
Alignment:
| Q |
136 |
gaggggtgaagaagagttatagaaggtgtgagagtgaaaatttnnnnnnncaacatcgtgtgttgcaaaggtgtgagagtgagaacaatggaaggaaaaa |
235 |
Q |
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| T |
26597464 |
gaggggtgaagaagagttatagaaggtgtgagagtgaaaatttaaaaaaacaacatcgtgtgttgcaaaggtgtgagagtgagaacaatggaaggaaaaa |
26597563 |
T |
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| Q |
236 |
cattgaacctgctcatgttgtt |
257 |
Q |
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| T |
26597564 |
cattgaacctgctcatgttgtt |
26597585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 26612877 - 26612927
Alignment:
| Q |
199 |
tgcaaaggtgtgagagtgagaacaatggaaggaaaaacattgaacctgctc |
249 |
Q |
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| T |
26612877 |
tgcaaagatgtgagagtgagaacagcggaaggaaaaagattgaagctgctc |
26612927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 248
Target Start/End: Original strand, 26605271 - 26605376
Alignment:
| Q |
140 |
ggtgaagaagagttatagaaggtgtgagagtgaaaatttnnnnnnncaacatcgtgtgttgcaaaggtgtgagagtgagaacaatggaaggaaaaacatt |
239 |
Q |
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||||||||||||||||||||||||||||| | | | ||| | || |||||| ||| ||||||||||||||||| |||| |||||||| |||| |
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| T |
26605271 |
ggtgaagaagagttatagaaggtgtgagactaatattttgaagaaacgacgtcgtgtattggaaaggtgtgagagtgag---aatgaaaggaaaatcatt |
26605367 |
T |
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| Q |
240 |
gaacctgct |
248 |
Q |
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| T |
26605368 |
gaagctgct |
26605376 |
T |
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