View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12942_low_65 (Length: 268)

Name: NF12942_low_65
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12942_low_65
NF12942_low_65
[»] chr6 (2 HSPs)
chr6 (1-252)||(33171064-33171316)
chr6 (208-252)||(33155374-33155418)
[»] chr5 (3 HSPs)
chr5 (134-184)||(35035572-35035622)
chr5 (142-184)||(8281993-8282035)
chr5 (134-184)||(35056826-35056876)
[»] chr8 (2 HSPs)
chr8 (153-190)||(3794020-3794057)
chr8 (141-181)||(10112336-10112376)
[»] chr4 (1 HSPs)
chr4 (150-182)||(20743904-20743936)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 33171316 - 33171064
Alignment:
Q  1 agtgtgattcaattggatgaacgcgtaaaaaagttttacgtcttcaatgcatgaaaattaatttcaacattaaatataagaatttattttgatagactga 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||||    
T  33171316 agtgtgattcaattggatgaacgtgtaaaaaagttttacgtcttcaatgtatgaaaattaatctcaacattaaatataagaatttgttttgatacactga 33171217  T
Q  101 tctattgacggtgtcaaaagtagaat-aatcaagtgtgtcattttataagtagttatgattaaaatcaaatatttgtaatgatctaatgatttcatctta 199  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||    
T  33171216 tctattgacggtgtcaaaagtagaatcaatcaagtgtgtcattttataagtagttatgcttaaaattaaatattagtaatgatctaatgatttcatctta 33171117  T
Q  200 cttttatatatgatttaattgagcagaggtttggtgaagacaaaggagatttc 252  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33171116 cttttatatatgatttatttgagcagaggtttggtgaagacaaaggagatttc 33171064  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 33155418 - 33155374
Alignment:
Q  208 tatgatttaattgagcagaggtttggtgaagacaaaggagatttc 252  Q
    |||||||||||||||||||| |||||||||||||  |||||||||    
T  33155418 tatgatttaattgagcagagatttggtgaagacattggagatttc 33155374  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 35035622 - 35035572
Alignment:
Q  134 tgtgtcattttataagtagttatgattaaaatcaaatatttgtaatgatct 184  Q
    ||||| |||||| |||||||||||||||||||||||||||| || ||||||    
T  35035622 tgtgtgattttagaagtagttatgattaaaatcaaatatttttattgatct 35035572  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 8282035 - 8281993
Alignment:
Q  142 tttataagtagttatgattaaaatcaaatatttgtaatgatct 184  Q
    |||||||||||||||||||||||||||||  || |||||||||    
T  8282035 tttataagtagttatgattaaaatcaaatgcttttaatgatct 8281993  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 35056876 - 35056826
Alignment:
Q  134 tgtgtcattttataagtagttatgattaaaatcaaatatttgtaatgatct 184  Q
    ||||| |||||| |||||||||| ||||||||||||||||| || ||||||    
T  35056876 tgtgtgattttagaagtagttataattaaaatcaaatatttttattgatct 35056826  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 3794057 - 3794020
Alignment:
Q  153 ttatgattaaaatcaaatatttgtaatgatctaatgat 190  Q
    |||||||||||||||||||||| || ||||||||||||    
T  3794057 ttatgattaaaatcaaatatttttattgatctaatgat 3794020  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 10112336 - 10112376
Alignment:
Q  141 ttttataagtagttatgattaaaatcaaatatttgtaatga 181  Q
    |||||||||||||| ||||||||||||||| ||| ||||||    
T  10112336 ttttataagtagttgtgattaaaatcaaatgtttttaatga 10112376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 20743904 - 20743936
Alignment:
Q  150 tagttatgattaaaatcaaatatttgtaatgat 182  Q
    ||||||||||||||||||||||||| |||||||    
T  20743904 tagttatgattaaaatcaaatatttttaatgat 20743936  T

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