View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_7 (Length: 700)
Name: NF12942_low_7
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 19 - 505
Target Start/End: Complemental strand, 47467196 - 47466710
Alignment:
| Q |
19 |
atcatagcttgatgccagttttgtacctcagtgtttgagactcaaactagtttctggtctctttgaatgttgttaaaaatttaatcccatataataaaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47467196 |
atcatagcttgatgccagttttgtacctcagtgtttgagactcaaactagtttctggtctctttgaatgttgttaaaaatttaatcccatataataaaac |
47467097 |
T |
|
| Q |
119 |
cgattgttattggtcgaatgcggataactcagcaaaatttgtgtttcatgcttagttgtgtccatgttatgtgattaaaccaatttgcttataattaatg |
218 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47467096 |
cgattgtcattggtcgaatgcggataactcagcaaaatttgtgtttcatgcttagttgtgtccatgttatgtgattaaaccaatttgcttataattaatg |
47466997 |
T |
|
| Q |
219 |
tgaaatcatgttctactaatatattccttgtctggagagagatgtgaaattgtgattatttttctctctgcctgttgttcaaatttttaaaataaactag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47466996 |
tgaaatcatgttctactaatatattccttgtctggagagagatgtgaaattgtgattatttttctctctgcctgttgttcaaatttttaaaataaactag |
47466897 |
T |
|
| Q |
319 |
ggctaggttaatttatacatccacattcacaatcatacgcatatcagtttccacaggtacaatggtttaacttgtacatttggactccaatggaagtgcc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47466896 |
ggctaggttaatttatacatccacattcacaatcatacgcatatcagtttccacaggtacaatggtttaatttgtacatttggactccaatggaagtgcc |
47466797 |
T |
|
| Q |
419 |
aaatgtgtgtttctttgtatttacactcggtgattgaaattgaaagtcatggttgaggcatacaactcgagcattaaatctaggaaa |
505 |
Q |
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| T |
47466796 |
aaatgtgtgtttctttgtatttacactcggtgattgaaattgaaagtcatggttgaggcatacaactcgagcattaaatctaggaaa |
47466710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 21 - 275
Target Start/End: Original strand, 47227432 - 47227679
Alignment:
| Q |
21 |
catagcttgatgccagttttgtacctcagtgtttgagactcaaactagtttctggtctctttgaatgttgttaaaaatttaatcccatat-aataaaacc |
119 |
Q |
| |
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|||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| || ||| ||||||||||| |||||||| |
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| T |
47227432 |
cataccttgatgccagttt-gtacctc--tgtttgagattcaaactagtttctggtctctttgcataactc---aaagttaatcccatacgaataaaact |
47227525 |
T |
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| Q |
120 |
gattgttattggtcgaatgcggataactcagcaaaatttgtgtttcatgcttagttgtgtccatgttatgtgattaaaccaatttgcttataattaatgt |
219 |
Q |
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||||||||||||| |||| || ||| |||||| ||||||||||| |||||||| || | | ||||||| ||||||||||| |||||||| |||||| || |
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| T |
47227526 |
gattgttattggttgaatacgtatagctcagccaaatttgtgttccatgcttaattatatacatgttacatgattaaaccagtttgcttaaaattaacgt |
47227625 |
T |
|
| Q |
220 |
gaaatcatgttctactaatatattccttgtctggagagagatgtgaaattgtgatt |
275 |
Q |
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| T |
47227626 |
gcaatcatgttccactaatattttcattgtctg--gagagatgtgaaattgtgatt |
47227679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 111 - 314
Target Start/End: Complemental strand, 28831076 - 28830879
Alignment:
| Q |
111 |
aataaaaccgattgttattggtcgaatgcggataactcagcaaaatttgtgtttcatgcttagttgtgtccatgttatgtgattaaaccaatttgcttat |
210 |
Q |
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||||||||| | |||||||||| |||| |||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||| |||||| | |
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| T |
28831076 |
aataaaacctagtgttattggttgaatacggataactcagcaaaatttgtgtttcatgcttaattatgtacatgttatgtgattaaaccagtttgct--t |
28830979 |
T |
|
| Q |
211 |
aattaatgtgaaatcatgttctactaatatattccttgtctggagagagatgtgaaattgtgattatttttctctctgcctgttgttcaaatttttaaaa |
310 |
Q |
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||||||| ||||||||||||| |||||||| ||| || || | |||||||| |||||||||| ||||||| |||||||||||||| || ||| |||| |
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| T |
28830978 |
aattaatatgaaatcatgttccactaatattttctttatccg--gagagatgcgaaattgtga-catttttc-ctctgcctgttgttttaagtttcaaaa |
28830883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 46923155 - 46923105
Alignment:
| Q |
21 |
catagcttgatgccagttttgtacctcagtgtttgagactcaaactagttt |
71 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46923155 |
catagctcgatgccaattttgtacctcagtgtttgagactcaaactagttt |
46923105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 457 - 523
Target Start/End: Original strand, 9450440 - 9450506
Alignment:
| Q |
457 |
attgaaagtcatggttgaggcatacaactcgagcattaaatctaggaaacaaatcgctcctagttta |
523 |
Q |
| |
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| T |
9450440 |
attgaaagtcatagttgagacatacaactcgtgcattaaatcttggagacaaattcgtcctagttta |
9450506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 46923015 - 46922960
Alignment:
| Q |
111 |
aataaaaccgattgttattggtcgaatgcggataactcagcaaaatttgtgtttcatgctta |
172 |
Q |
| |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
46923015 |
aataaaaccgattgttaatggtcg------gataactcagcaaaatttgtgtttcatgctta |
46922960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 510
Target Start/End: Complemental strand, 28838790 - 28838737
Alignment:
| Q |
457 |
attgaaagtcatggttgaggcatacaactcgagcattaaatctaggaaacaaat |
510 |
Q |
| |
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|||||||||| |||||||| |||||||||| ||||||||||| ||| |||||| |
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| T |
28838790 |
attgaaagtcttggttgagacatacaactcatgcattaaatcttggagacaaat |
28838737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 310
Target Start/End: Original strand, 1466217 - 1466313
Alignment:
| Q |
210 |
taattaatgtgaaatcatgttctactaatatattccttgtctggagagagatgtgaaattgtgattatttttctctctgcctgttgttcaaatttttaaa |
309 |
Q |
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|||||||| ||||||||| ||| |||||||| ||| ||||| ||||||| || |||||||| | ||||||| ||||||||||||||| || ||||||| |
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| T |
1466217 |
taattaatatgaaatcatattccactaatattttctttgtccggagaga--tgcgaaattgtaac-atttttc-ctctgcctgttgttctaagttttaaa |
1466312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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