View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12942_low_70 (Length: 252)

Name: NF12942_low_70
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12942_low_70
NF12942_low_70
[»] chr8 (35 HSPs)
chr8 (20-205)||(7944442-7944627)
chr8 (135-232)||(5942780-5942877)
chr8 (20-102)||(5942694-5942776)
chr8 (20-174)||(5973058-5973212)
chr8 (20-206)||(39332327-39332510)
chr8 (28-191)||(34789796-34789959)
chr8 (20-126)||(41677172-41677279)
chr8 (20-118)||(8102910-8103008)
chr8 (20-126)||(11290182-11290288)
chr8 (20-202)||(15078756-15078938)
chr8 (44-198)||(30674330-30674484)
chr8 (23-126)||(45475818-45475921)
chr8 (20-126)||(15167414-15167520)
chr8 (20-207)||(8646204-8646390)
chr8 (23-126)||(13534686-13534788)
chr8 (23-126)||(13624226-13624328)
chr8 (23-126)||(23606628-23606731)
chr8 (23-126)||(30883330-30883433)
chr8 (23-125)||(23798261-23798363)
chr8 (23-126)||(2952220-2952323)
chr8 (23-126)||(10917392-10917495)
chr8 (23-126)||(41879182-41879285)
chr8 (23-125)||(5860744-5860846)
chr8 (23-119)||(42600783-42600879)
chr8 (20-117)||(5721557-5721654)
chr8 (20-125)||(14509983-14510087)
chr8 (19-203)||(34048630-34048813)
chr8 (23-126)||(37430157-37430260)
chr8 (20-124)||(25561496-25561598)
chr8 (23-126)||(3048516-3048619)
chr8 (20-121)||(23941095-23941196)
chr8 (86-206)||(38009070-38009191)
chr8 (82-125)||(9108553-9108596)
chr8 (82-125)||(34868177-34868220)
chr8 (135-200)||(34812682-34812747)
[»] chr7 (38 HSPs)
chr7 (20-206)||(2611179-2611366)
chr7 (20-206)||(6765602-6765785)
chr7 (20-200)||(12981324-12981502)
chr7 (26-125)||(9021799-9021898)
chr7 (23-126)||(29077221-29077324)
chr7 (23-126)||(48983842-48983945)
chr7 (26-124)||(36902924-36903022)
chr7 (20-200)||(23859071-23859251)
chr7 (23-126)||(8171537-8171640)
chr7 (23-126)||(20091279-20091382)
chr7 (20-126)||(7398449-7398555)
chr7 (20-206)||(12419413-12419599)
chr7 (24-205)||(23020404-23020583)
chr7 (34-206)||(23744808-23744980)
chr7 (23-126)||(18776764-18776867)
chr7 (23-121)||(24525688-24525786)
chr7 (20-126)||(27237421-27237527)
chr7 (20-126)||(36891576-36891682)
chr7 (23-126)||(10955485-10955588)
chr7 (23-102)||(23551093-23551172)
chr7 (20-122)||(18201135-18201237)
chr7 (46-126)||(26254017-26254097)
chr7 (23-126)||(19692095-19692198)
chr7 (23-126)||(38414874-38414977)
chr7 (23-117)||(12596294-12596388)
chr7 (23-119)||(47984974-47985071)
chr7 (23-119)||(10329415-10329511)
chr7 (24-172)||(38971255-38971402)
chr7 (23-118)||(8239688-8239783)
chr7 (27-118)||(20153206-20153297)
chr7 (46-125)||(33162338-33162417)
chr7 (39-125)||(21763586-21763672)
chr7 (27-126)||(28749715-28749813)
chr7 (20-111)||(9014782-9014866)
chr7 (23-68)||(25010434-25010479)
chr7 (25-88)||(17800257-17800320)
chr7 (83-125)||(9014177-9014219)
chr7 (140-206)||(26917649-26917715)
[»] chr2 (37 HSPs)
chr2 (25-207)||(24035463-24035645)
chr2 (20-203)||(16097005-16097188)
chr2 (20-203)||(38400795-38400978)
chr2 (20-180)||(13800489-13800650)
chr2 (20-200)||(28425632-28425815)
chr2 (23-206)||(21665620-21665802)
chr2 (23-126)||(29939861-29939964)
chr2 (20-126)||(12134039-12134145)
chr2 (23-121)||(24410437-24410535)
chr2 (23-126)||(9046029-9046133)
chr2 (23-126)||(3155217-3155320)
chr2 (23-126)||(4505894-4505997)
chr2 (23-126)||(6965007-6965110)
chr2 (23-126)||(12337447-12337550)
chr2 (23-117)||(3953006-3953100)
chr2 (23-125)||(10762565-10762667)
chr2 (23-126)||(26716128-26716232)
chr2 (20-125)||(16227368-16227473)
chr2 (49-126)||(40636164-40636241)
chr2 (23-126)||(7162784-7162887)
chr2 (23-118)||(8907086-8907181)
chr2 (44-203)||(42029166-42029329)
chr2 (85-198)||(22727384-22727497)
chr2 (20-92)||(37182667-37182739)
chr2 (20-126)||(7742132-7742239)
chr2 (24-119)||(27506746-27506841)
chr2 (20-125)||(11912757-11912862)
chr2 (46-126)||(34693998-34694078)
chr2 (46-126)||(34716410-34716490)
chr2 (49-126)||(5952716-5952791)
chr2 (29-97)||(22727530-22727598)
chr2 (75-125)||(10252468-10252518)
chr2 (71-125)||(11952588-11952641)
chr2 (139-199)||(7742055-7742115)
chr2 (139-203)||(37182760-37182824)
chr2 (139-200)||(11952514-11952575)
chr2 (138-199)||(12694794-12694855)
[»] scaffold0012 (1 HSPs)
scaffold0012 (20-174)||(206440-206594)
[»] chr5 (45 HSPs)
chr5 (26-207)||(26718864-26719045)
chr5 (26-207)||(26988608-26988789)
chr5 (20-198)||(33037778-33037958)
chr5 (20-206)||(11242235-11242420)
chr5 (20-174)||(2530846-2530999)
chr5 (20-126)||(36868872-36868978)
chr5 (19-175)||(1366473-1366629)
chr5 (20-195)||(34425901-34426076)
chr5 (20-125)||(14318382-14318487)
chr5 (23-126)||(34756362-34756465)
chr5 (23-126)||(38869359-38869462)
chr5 (23-117)||(15480094-15480188)
chr5 (23-119)||(9364292-9364388)
chr5 (23-119)||(16198797-16198893)
chr5 (23-118)||(16799331-16799426)
chr5 (23-126)||(27079012-27079115)
chr5 (23-126)||(28822338-28822441)
chr5 (20-125)||(2412086-2412191)
chr5 (25-206)||(10407464-10407645)
chr5 (23-126)||(16592070-16592173)
chr5 (23-126)||(23284058-23284161)
chr5 (23-126)||(30854330-30854433)
chr5 (20-126)||(2024638-2024744)
chr5 (23-116)||(19523200-19523293)
chr5 (21-126)||(36187875-36187980)
chr5 (23-119)||(40389539-40389635)
chr5 (23-126)||(2274891-2274994)
chr5 (46-125)||(7338023-7338102)
chr5 (23-126)||(22986554-22986657)
chr5 (27-126)||(31194608-31194706)
chr5 (20-125)||(41911614-41911719)
chr5 (20-124)||(22648734-22648838)
chr5 (20-199)||(40794249-40794429)
chr5 (24-118)||(24395741-24395835)
chr5 (27-119)||(7670929-7671022)
chr5 (24-112)||(27924084-27924172)
chr5 (31-125)||(10543682-10543776)
chr5 (86-206)||(35080688-35080806)
chr5 (35-126)||(17344969-17345060)
chr5 (27-126)||(31881430-31881528)
chr5 (77-126)||(606209-606258)
chr5 (22-102)||(15639643-15639723)
chr5 (82-126)||(27530543-27530587)
chr5 (83-121)||(22875003-22875041)
chr5 (136-206)||(27530608-27530678)
[»] chr4 (54 HSPs)
chr4 (21-206)||(36118377-36118561)
chr4 (22-125)||(35779325-35779427)
chr4 (24-199)||(39329317-39329492)
chr4 (23-126)||(54780783-54780886)
chr4 (41-205)||(39655172-39655337)
chr4 (23-126)||(2790739-2790842)
chr4 (23-126)||(10978906-10979009)
chr4 (20-200)||(27112033-27112212)
chr4 (23-126)||(34768572-34768675)
chr4 (23-126)||(43455529-43455632)
chr4 (23-126)||(47128993-47129096)
chr4 (23-125)||(38209590-38209692)
chr4 (20-126)||(52468289-52468395)
chr4 (23-119)||(34027585-34027681)
chr4 (31-126)||(32128598-32128693)
chr4 (23-118)||(37777229-37777324)
chr4 (29-123)||(36178684-36178778)
chr4 (20-206)||(51691838-51692021)
chr4 (23-126)||(32915391-32915494)
chr4 (20-102)||(4167913-4167995)
chr4 (20-121)||(2135324-2135425)
chr4 (84-207)||(30507036-30507162)
chr4 (20-198)||(40217235-40217411)
chr4 (23-126)||(48209246-48209349)
chr4 (23-126)||(54083240-54083343)
chr4 (20-126)||(10041998-10042104)
chr4 (20-126)||(24396937-24397043)
chr4 (20-117)||(37744916-37745014)
chr4 (21-114)||(5128852-5128945)
chr4 (23-116)||(13460213-13460306)
chr4 (23-126)||(16845027-16845131)
chr4 (23-126)||(19498510-19498611)
chr4 (29-117)||(37514671-37514759)
chr4 (23-103)||(40089522-40089602)
chr4 (24-123)||(15735102-15735196)
chr4 (23-117)||(1105538-1105632)
chr4 (25-126)||(35465115-35465215)
chr4 (48-119)||(10428202-10428273)
chr4 (20-126)||(36362869-36362974)
chr4 (49-126)||(17679432-17679509)
chr4 (20-121)||(45656178-45656279)
chr4 (35-126)||(16882393-16882484)
chr4 (46-126)||(16922327-16922407)
chr4 (82-125)||(24614018-24614061)
chr4 (139-200)||(4167846-4167907)
chr4 (23-68)||(24969443-24969488)
chr4 (46-126)||(51964737-51964820)
chr4 (70-119)||(23508515-23508565)
chr4 (23-68)||(38352311-38352356)
chr4 (82-126)||(9578662-9578706)
chr4 (135-206)||(5893130-5893201)
chr4 (135-200)||(11906826-11906891)
chr4 (23-76)||(23509846-23509899)
chr4 (82-126)||(55255322-55255366)
[»] scaffold1590 (1 HSPs)
scaffold1590 (20-151)||(232-363)
[»] chr1 (40 HSPs)
chr1 (20-200)||(45758503-45758685)
chr1 (20-202)||(43235690-43235874)
chr1 (20-206)||(39134638-39134827)
chr1 (23-119)||(27559649-27559745)
chr1 (23-126)||(5316692-5316795)
chr1 (23-126)||(23185439-23185542)
chr1 (23-126)||(44655753-44655856)
chr1 (20-125)||(38547035-38547140)
chr1 (20-200)||(5533321-5533501)
chr1 (20-125)||(26803957-26804059)
chr1 (23-121)||(9173026-9173124)
chr1 (23-121)||(9181008-9181106)
chr1 (21-126)||(50881440-50881545)
chr1 (21-117)||(6771801-6771897)
chr1 (23-119)||(17168968-17169064)
chr1 (23-126)||(5027561-5027664)
chr1 (23-126)||(14146312-14146415)
chr1 (23-125)||(4971617-4971719)
chr1 (28-126)||(38853539-38853637)
chr1 (23-124)||(1366878-1366979)
chr1 (20-125)||(6221687-6221791)
chr1 (21-118)||(40501796-40501893)
chr1 (25-117)||(16140069-16140161)
chr1 (22-126)||(50146307-50146411)
chr1 (23-119)||(19955729-19955825)
chr1 (22-126)||(33170770-33170874)
chr1 (23-126)||(3406430-3406533)
chr1 (23-126)||(3440287-3440390)
chr1 (34-126)||(6889634-6889726)
chr1 (34-126)||(6891480-6891572)
chr1 (23-126)||(41697135-41697238)
chr1 (24-118)||(51607445-51607540)
chr1 (32-126)||(21740935-21741029)
chr1 (46-126)||(22865459-22865538)
chr1 (20-126)||(10925951-10926058)
chr1 (36-126)||(35392295-35392384)
chr1 (23-126)||(44895664-44895761)
chr1 (23-119)||(13913485-13913583)
chr1 (83-126)||(17322621-17322664)
chr1 (82-126)||(27906727-27906771)
[»] scaffold0039 (1 HSPs)
scaffold0039 (23-126)||(106539-106642)
[»] scaffold0007 (1 HSPs)
scaffold0007 (24-206)||(230780-230960)
[»] scaffold0182 (1 HSPs)
scaffold0182 (20-125)||(23993-24098)
[»] scaffold0097 (1 HSPs)
scaffold0097 (20-202)||(38923-39108)
[»] scaffold1320 (1 HSPs)
scaffold1320 (20-202)||(1352-1534)
[»] chr6 (23 HSPs)
chr6 (20-200)||(2477510-2477689)
chr6 (23-126)||(13727398-13727501)
chr6 (23-126)||(20711719-20711822)
chr6 (23-126)||(21479498-21479601)
chr6 (23-126)||(27788687-27788790)
chr6 (23-118)||(33774121-33774216)
chr6 (24-126)||(21280550-21280652)
chr6 (23-119)||(28075787-28075883)
chr6 (23-126)||(19737691-19737794)
chr6 (20-206)||(20611791-20611975)
chr6 (27-125)||(1155849-1155947)
chr6 (20-122)||(6159439-6159541)
chr6 (20-114)||(21183686-21183780)
chr6 (21-126)||(34397859-34397964)
chr6 (23-119)||(17353958-17354054)
chr6 (23-117)||(24711007-24711101)
chr6 (23-117)||(30832532-30832626)
chr6 (44-125)||(30121787-30121868)
chr6 (46-126)||(27314177-27314258)
chr6 (24-108)||(4036953-4037037)
chr6 (25-70)||(27994775-27994820)
chr6 (23-119)||(235230-235328)
chr6 (139-200)||(27994875-27994936)
[»] chr3 (36 HSPs)
chr3 (23-126)||(3953895-3953998)
chr3 (23-118)||(8073345-8073440)
chr3 (23-126)||(21582775-21582878)
chr3 (23-126)||(54619202-54619305)
chr3 (28-200)||(49393099-49393269)
chr3 (23-126)||(34290635-34290738)
chr3 (20-126)||(54574826-54574932)
chr3 (20-199)||(25855423-25855601)
chr3 (23-118)||(44708481-44708576)
chr3 (23-126)||(53506883-53506986)
chr3 (20-126)||(8420327-8420433)
chr3 (24-126)||(37168372-37168474)
chr3 (23-117)||(47467688-47467782)
chr3 (20-126)||(26279541-26279649)
chr3 (20-125)||(32319155-32319260)
chr3 (25-126)||(38681092-38681193)
chr3 (23-126)||(42098805-42098908)
chr3 (23-126)||(43207237-43207339)
chr3 (31-126)||(54407157-54407252)
chr3 (20-125)||(789937-790042)
chr3 (25-126)||(18372485-18372590)
chr3 (23-119)||(27078575-27078671)
chr3 (23-119)||(27084372-27084468)
chr3 (23-126)||(9878686-9878789)
chr3 (47-126)||(36716024-36716103)
chr3 (23-126)||(53149313-53149416)
chr3 (28-169)||(28689317-28689458)
chr3 (50-126)||(42453435-42453511)
chr3 (23-119)||(50939239-50939335)
chr3 (19-126)||(52374656-52374763)
chr3 (27-119)||(36605973-36606065)
chr3 (61-200)||(23641242-23641382)
chr3 (58-126)||(50258622-50258690)
chr3 (23-90)||(29620423-29620490)
chr3 (23-68)||(48157143-48157188)
chr3 (138-206)||(36179476-36179544)
[»] scaffold0018 (1 HSPs)
scaffold0018 (20-120)||(173515-173615)
[»] scaffold0070 (1 HSPs)
scaffold0070 (23-126)||(1344-1447)
[»] scaffold0022 (2 HSPs)
scaffold0022 (20-174)||(40083-40240)
scaffold0022 (20-174)||(138143-138300)
[»] scaffold0227 (2 HSPs)
scaffold0227 (20-90)||(16025-16095)
scaffold0227 (82-118)||(16125-16161)
[»] scaffold0003 (1 HSPs)
scaffold0003 (20-119)||(351339-351439)
[»] scaffold0001 (1 HSPs)
scaffold0001 (23-69)||(181920-181966)


Alignment Details
Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 7944627 - 7944442
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||  || ||||||| || ||||||||||| ||||||||| |||||||| |||||||    
T  7944627 tgaggttcctcatgtatacggtagtgattttcacctttgggtgtacaacatatatacggcaccttgtatttattttttaaaaaatttaaataaaacattg 7944528  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccct 205  Q
    |||||||        ||||||||||||||||| ||  |||||||||| |||||||||||||||||| |||||||||||||| ||||    
T  7944527 ttcttttaaaaaaaatacatttttattttattacggacctcttttcaattacagaatcgagcttcctgattcgtaggaacggccct 7944442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 5942780 - 5942877
Alignment:
Q  135 tacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctggccacaccacaaagtgccagatcaac 232  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  5942780 tacatttttattttattacggtcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccttgaccacaccacaaagtgccagatcaac 5942877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 5942694 - 5942776
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaa 102  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5942694 tgaggttcctcatgtatacggtagtgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaa 5942776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 5973212 - 5973058
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||| ||||||||||||||||||||| || |||||||||  || |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  5973212 tgaggttcctcgtgtatacggtaatgattttcatctatgggtgtacaacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattg 5973113  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacaga 174  Q
    |||||||        ||||||||||||||||| |   |||||||||| |||||||    
T  5973112 ttcttttaaaacgaatacatttttattttattacagacctcttttcatttacaga 5973058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 39332510 - 39332327
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||  ||||| |||| |||||||||||||||| ||||  |||||||||||||||    
T  39332510 tgaggttcctcatgtatacggtagtgattttcacctttggatgtaccgcttatatatgacaccttgtatttatctttttaaaaaattaaatagaacattg 39332411  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
    ||||||          || ||||||||||||| |||  |||||||||| ||||||| ||||| |||| ||||||||||||| |||||    
T  39332410 ttcttt---aaaaaaaacttttttattttattacgagtctcttttcacctacagaaccgagcctccgaattcgtaggaacggccctg 39332327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 34789959 - 34789796
Alignment:
Q  28 ctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttttn 127  Q
    ||||||||||||||| ||||||||||||||||||||||  || ||||||||||||||||||||||||||||| |  |||||||||||||| ||||||||     
T  34789959 ctcatgtatacggtagtgattttcacctttgggtgtacaacatatatacgacatcttgtatttatcttttaagagatttaaatagaacatcgttctttta 34789860  T
Q  128 nnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattc 191  Q
           ||||||||||||||||| ||  ||| |||||||||| |||  ||||||||| |||||    
T  34789859 aaaaaaatacatttttattttattacggaccttttttcacttatagagccgagcttccagattc 34789796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 41677279 - 41677172
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatctttta-aaaattttaaatagaacatt 118  Q
    ||||||||||||||||||| ||| |||||||||||||| | |||| |||| |||||||||||||||||||||||||||| |||| |||||||||||||||    
T  41677279 tgaggttcctcatgtatacagtagtgattttcacctttagatgtatcgcatatatacgacatcttgtatttatcttttaaaaaaatttaaatagaacatt 41677180  T
Q  119 gttctttt 126  Q
    ||||||||    
T  41677179 gttctttt 41677172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 8102910 - 8103008
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||  || ||||||||||||||||||||| |||||||| ||||||    
T  8102910 tgaggttcctcatgtatacggtaatgattttcacctttaggtgtaccgcatatatactgcaccttgtatttatcttttaaaaaatttaaatataacatt 8103008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 11290182 - 11290288
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||| ||||||||||||||| ||||||||||||||| ||||||  || |||||||||| ||||||||||||||||||||| |||||||| |||||||    
T  11290182 tgaggttgctcatgtatacggtagtgattttcacctttgagtgtacaacatatatacgacaccttgtatttatcttttaaaaaatttaaataaaacattg 11290281  T
Q  120 ttctttt 126  Q
    |||||||    
T  11290282 ttctttt 11290288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 15078756 - 15078938
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||||| || |||||||||| ||||||||||  ||| ||||||  || ||| |||||||||||||||||||||||||||||||||     
T  15078756 tgaggttcctcatgtatacgatagtgattttcacatttgggtgtatagcatatatacagcaccttatatttatcttttaaaaattttaaatagaacatta 15078855  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgac 202  Q
    |||||||        ||| ||||||||||||| ||  | ||||||||||||||||   |||| | | ||||||||||||||||    
T  15078856 ttcttttaaaaaaaatacgtttttattttattacggacttcttttcacttacagagcagagccttcagattcgtaggaacgac 15078938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 30674484 - 30674330
Alignment:
Q  44 tgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttttnnnnnnnntacattttt 143  Q
    ||||||||||||||| ||||| |||| |||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||         ||| |||||    
T  30674484 tgattttcacctttgagtgtatcgcatatatacgacaccttatatttatcttttaaaacatttaaatagaacattgttctttaaaaaaaaatacgttttt 30674385  T
Q  144 attttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaa 198  Q
    |||||||| ||| ||||||||||||||||||  ||||| ||| ||||||||||||    
T  30674384 attttattacgagcctcttttcacttacagagccgagcctccagattcgtaggaa 30674330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 45475818 - 45475921
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  45475818 ggttcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 45475917  T
Q  123 tttt 126  Q
    ||||    
T  45475918 tttt 45475921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 15167520 - 15167414
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||||| || |||||||||| |||||||||| |||| |||||| |||  || ||||||||||||||||| ||||||||||||||||    
T  15167520 tgaggttcctcatgtatacgatagtgattttcacatttgggtgtatcgcatatatacaacactttatatttatcttttaaaaaatttaaatagaacattg 15167421  T
Q  120 ttctttt 126  Q
    |||||||    
T  15167420 ttctttt 15167414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 8646204 - 8646390
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||| || |||||||||||| |||||||||| |||| |||||  ||| |||||||| | ||||||||||||||||||||| ||||||||||||||||    
T  8646204 tgaggtttcttatgtatacggtagtgattttcacatttgcgtgtat-gcatatatacgataccttgtatttatcttttaaaaaatttaaatagaacattg 8646302  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctgg 207  Q
    |||||||        ||| |||||||||||||  |   ||||||| |||||||| ||||| ||| | |||||||| ||||| ||||||    
T  8646303 ttcttttaaaaaaattacgtttttattttattaaggatctcttttgacttacaggatcgaactttcagattcgtaagaacggccctgg 8646390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 13534788 - 13534686
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  13534788 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggca-cttgtatttatcttttaaaaaatataaatagaacattgctc 13534690  T
Q  123 tttt 126  Q
    ||||    
T  13534689 tttt 13534686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 13624328 - 13624226
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  13624328 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggca-cttgtatttatcttttaaaaaatataaatagaacattgctc 13624230  T
Q  123 tttt 126  Q
    ||||    
T  13624229 tttt 13624226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 23606731 - 23606628
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||| ||||||| || ||| ||||||||||||||||| | |||||||||||||| ||    
T  23606731 ggttcctcatgtatacggtagtcatttttacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 23606632  T
Q  123 tttt 126  Q
    ||||    
T  23606631 tttt 23606628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 30883330 - 30883433
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| ||||||||||||| ||||||| ||  |||||||||||||||||||| | |||||||||||||| ||    
T  30883330 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcacattgtatttatcttttaaaaaatataaatagaacattgctc 30883429  T
Q  123 tttt 126  Q
    ||||    
T  30883430 tttt 30883433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 23798363 - 23798261
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||| ||||||||||||||| ||||||| || ||| ||||||||||||||||| | |||||||||||||| ||    
T  23798363 ggttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 23798264  T
Q  123 ttt 125  Q
    |||    
T  23798263 ttt 23798261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 2952323 - 2952220
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | ||||||| || ||||||||||||| ||||||| ||  |||||||||||||||||||| | |||||||||||||| ||    
T  2952323 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcactttgtatttatcttttaaaaaatataaatagaacattgctc 2952224  T
Q  123 tttt 126  Q
    ||||    
T  2952223 tttt 2952220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 10917392 - 10917495
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    ||||||||||||||| |||| | |||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||| | |||||||| |||||||     
T  10917392 ggttcctcatgtataaggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagatcattgttt 10917491  T
Q  123 tttt 126  Q
    ||||    
T  10917492 tttt 10917495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 41879182 - 41879285
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||| ||||||||| ||||| | |||||||||||||| ||||||||| |||||||  | ||||||||||||||||||||| | |||||||||||||||||    
T  41879182 ggtttctcatgtattcggtagtcattttcacctttggatgtaccgcatatatacggtaccttgtatttatcttttaaaaaatataaatagaacattgttc 41879281  T
Q  123 tttt 126  Q
    ||||    
T  41879282 tttt 41879285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 5860846 - 5860744
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||| |||||||||| |||| | |||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  5860846 ggtttctcatgtatatggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 5860747  T
Q  123 ttt 125  Q
    |||    
T  5860746 ttt 5860744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 42600783 - 42600879
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||||| | ||||||||||||||||||||| || ||||||| || ||| ||||||||||||||||| | |||||||| |||||    
T  42600783 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccacatatatacggcaccttatatttatcttttaaaaaatataaatagatcattg 42600879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 5721557 - 5721654
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacat 117  Q
    |||||||||||| |||||||||| |||||||||| |||||||||||||   ||||| | || |||||||||||||||||||||  |||||||||||||    
T  5721557 tgaggttcctcaggtatacggtagtgattttcacttttgggtgtaccgattatatagggcaccttgtatttatcttttaaaaaaattaaatagaacat 5721654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 14510087 - 14509983
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgatttt-cacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    ||||||| ||||||||||||||| ||||||| ||| ||||||||||||| |  ||||||||| ||| ||||| ||||||||||| ||||||| |||||||    
T  14510087 tgaggttactcatgtatacggtagtgatttttcacatttgggtgtaccgta--tatacgacaccttatatttgtcttttaaaaaatttaaattgaacatt 14509990  T
Q  119 gttcttt 125  Q
    |||||||    
T  14509989 gttcttt 14509983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 34048813 - 34048630
Alignment:
Q  19 atgaggttcctcatgtatacggtaatgattttcacctttgggtgtacc--gcacatatacgacatcttgtatttatcttttaaaaattttaaatagaaca 116  Q
    |||||| ||||||||||||| ||| ||||||||| ||||||||||| |    | ||||||||||  |||||||||||||||||||  |||||||||||||    
T  34048813 atgaggatcctcatgtatacagtagtgattttcatctttgggtgtatcatatatatatacgacacattgtatttatcttttaaaatgtttaaatagaaca 34048714  T
Q  117 ttgttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgacc 203  Q
    |||||||||          |||||||||||||||| ||   || ||||||||||||||  ||||| |||  ||||||||||||||||    
T  34048713 ttgttcttt---aaaaaaaacatttttattttattacgggtctattttcacttacagagccgagcctccaaattcgtaggaacgacc 34048630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 37430260 - 37430157
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | ||||| |||| | |||||| |||| ||||||| || ||||||||||||||||||||| | |||||||||||| | ||    
T  37430260 ggttcctcatgtatacggtagtcatttttacctctaggtgtaacgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctc 37430161  T
Q  123 tttt 126  Q
    ||||    
T  37430160 tttt 37430157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 25561598 - 25561496
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||||||| | |||||||||| ||||||| || |||| ||||||| || |||||||||||| |||||||  |||||||||||||||     
T  25561598 tgaggttcctcatgtatacggcagtgattttcacatttgggt-tatcgcatatatacggcaccttgtatttatc-tttaaaagatttaaatagaacatta 25561501  T
Q  120 ttctt 124  Q
    |||||    
T  25561500 ttctt 25561496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 3048619 - 3048516
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||| ||||||||||| | ||||||| || | ||||||||||| ||||||| || ||||||||||||||||||||| | ||||||| | |||| ||    
T  3048619 ggttcctcgtgtatacggtagtcattttcatctctaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagtatattgctc 3048520  T
Q  123 tttt 126  Q
    ||||    
T  3048519 tttt 3048516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 23941196 - 23941095
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||| | |||| | |  ||||||||| ||||||||||| |||  ||||| |||| ||||||||||||||||||||| |||||||| |||||||    
T  23941196 tgaggttcctcgtatatatgattgtgattttcatctttgggtgtatcgcttatatatgacaccttgtatttatcttttaaaaaatttaaataaaacattg 23941097  T
Q  120 tt 121  Q
    ||    
T  23941096 tt 23941095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 206
Target Start/End: Complemental strand, 38009191 - 38009070
Alignment:
Q  86 tatttatcttttaaaaattttaaatagaacattgttcttttnnnnnnnntaca-tttttattttatttcgatcctcttttcacttacagaatcgagcttc 184  Q
    |||||||||||||||||||||||||||||||||||||||||         | | ||||||||||||| ||  | |||||||| |||||||| ||||| ||    
T  38009191 tatttatcttttaaaaattttaaatagaacattgttcttttaaaaaaaaaaaagtttttattttattacggacttcttttcagttacagaaccgagcctc 38009092  T
Q  185 cggattcgtaggaacgaccctg 206  Q
    ||||||| |||||||| |||||    
T  38009091 cggattcataggaacggccctg 38009070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 9108553 - 9108596
Alignment:
Q  82 cttgtatttatcttttaaaaattttaaatagaacattgttcttt 125  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  9108553 cttgtatttatcttttaaaaaatttaaatagaacattgttcttt 9108596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 34868220 - 34868177
Alignment:
Q  82 cttgtatttatcttttaaaaattttaaatagaacattgttcttt 125  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||    
T  34868220 cttgtatttatcttttaaaaaatttaaatagaacattattcttt 34868177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 34812747 - 34812682
Alignment:
Q  135 tacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacg 200  Q
    ||||||||||||||||  |   |||||||||||||||||| ||||||  ||||||| |||||||||    
T  34812747 tacatttttattttatgacatacctcttttcacttacagagtcgagcccccggatttgtaggaacg 34812682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 2611366 - 2611179
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||||| ||  ||||||||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  2611366 tgaggttcctcatgtatacagttgtgattttcaccattgtgtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattg 2611267  T
Q  120 ttctttt-nnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
    |||||||         ||| ||||||||||||| | | ||||||||||||| ||||| ||||| ||||||||| ||||||||||||||    
T  2611266 ttcttttaaaaaaaaatacttttttattttattacaagcctcttttcacttgcagaaccgagcctccggattcataggaacgaccctg 2611179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 6765785 - 6765602
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||| ||| | ||||||||| |||||||||||||||| ||||| ||  |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  6765785 tgaggttactcttatatacggtagtgattttcacctttggatgtacggcttatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattg 6765686  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
    ||||||          || ||||||||||||| ||| ||||||||||  |||||||  |||| ||||||||||||||||| ||||||    
T  6765685 ttcttt---aaaaaaaacttttttattttattacgagcctcttttcatctacagaactgagcctccggattcgtaggaacaaccctg 6765602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 12981324 - 12981502
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||| ||||| ||| ||||||||||||||| |||||||||  ||||| |  | |||||||||||||||||||||  ||||||||||||||     
T  12981324 tgaggttcctcatatatacagtagtgattttcacctttgtgtgtaccgcgtatatatggaaccttgtatttatcttttaaaaaaattaaatagaacattc 12981423  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacg 200  Q
    |||||||         |||||||||||||||| ||| ||||||||||| ||||||| ||| | ||||||||||||||||||    
T  12981424 ttcttttataaaaa--acatttttattttattacgagcctcttttcacctacagaaccgaacctccggattcgtaggaacg 12981502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 9021898 - 9021799
Alignment:
Q  26 tcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttt 125  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||  |||||||||||||||||||| ||||||||| | ||||||||||    
T  9021898 tcctcatgtatacggtagtgattttcacctttgggtgtaccgcatatatacggcacattgtatttatcttttaaaaaatttaaatagcaaattgttcttt 9021799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 29077221 - 29077324
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||| | |||||||||||||| ||    
T  29077221 ggttcctcatgtatacggtagtcattttcacctcttggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 29077320  T
Q  123 tttt 126  Q
    ||||    
T  29077321 tttt 29077324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 48983945 - 48983842
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| | |||||||| |||||||     
T  48983945 ggttcctcatgtatacggtagttattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagatcattgttt 48983846  T
Q  123 tttt 126  Q
    ||||    
T  48983845 tttt 48983842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 36903022 - 36902924
Alignment:
Q  26 tcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctt 124  Q
    ||||||||||||| ||| |||||||||||||| |||||||  || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  36903022 tcctcatgtatacagtactgattttcacctttaggtgtacaacatatatacgacatcttgtatttatctattaaaaaatttaaatagaacattgttctt 36902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 23859071 - 23859251
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||| ||||||||||||||||| | ||||||| ||||||||||| |||| |||||||  |  |||||||||||||||||||| |||||||||||||||     
T  23859071 tgaggatcctcatgtatacggtagtaattttcatctttgggtgtatcgcatatatacggtacattgtatttatcttttaaaaaatttaaatagaacatta 23859170  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacg 200  Q
    |||| ||        ||| ||||||||||||| |    ||||||||||||||||| |||||| |||  |||||||||||||    
T  23859171 ttctcttaaacaaaatacgtttttattttattacaggtctcttttcacttacagagtcgagcctccaaattcgtaggaacg 23859251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 8171640 - 8171537
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | ||||||| || ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  8171640 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 8171541  T
Q  123 tttt 126  Q
    ||||    
T  8171540 tttt 8171537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 20091382 - 20091279
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||| | |||||||| |||||||     
T  20091382 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagatcattgttt 20091283  T
Q  123 tttt 126  Q
    ||||    
T  20091282 tttt 20091279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 7398449 - 7398555
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||| |||| |||||||||||||| |||||| | || ||||| | || ||||||||||||||| ||||| ||||||||||||||||    
T  7398449 tgaggttcctcatgtatatggtagtgattttcacctttaggtgtatcacatatatatggcaccttgtatttatctttcaaaaaatttaaatagaacattg 7398548  T
Q  120 ttctttt 126  Q
    |||||||    
T  7398549 ttctttt 7398555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 12419599 - 12419413
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||| |  || ||||||||| |||||| |||| | |||||||| |  |  |||||||||||||||||||| ||||||||||||||||    
T  12419599 tgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacattg 12419500  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
    |||||||        ||| || |||||||||| ||  |||||||||||||||| |  ||||| ||||||||| |||||||| |||||    
T  12419499 ttcttttaaaaaaaatacgttgttattttattacgggcctcttttcacttacaaagccgagcctccggattcataggaacggccctg 12419413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 23020583 - 23020404
Alignment:
Q  24 gttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttct 123  Q
    ||||||||||||||||||| ||||||||||||||| ||||   ||| |||||| ||| ||| ||||||||||||||||| | |||||  ||| |||||||    
T  23020583 gttcctcatgtatacggtagtgattttcacctttgagtgt-gtgcatatatacaacaccttatatttatcttttaaaaaatctaaatgaaacgttgttct 23020485  T
Q  124 tttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccct 205  Q
    |||        ||||||||||||||||| ||  ||||||||||||||||||| || || ||| |||||||||||||| ||||    
T  23020484 tttaaaaaaaatacatttttattttattacggacctcttttcacttacagaaccg-gcctccagattcgtaggaacggccct 23020404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 23744808 - 23744980
Alignment:
Q  34 tatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttttnnnnnnn 133  Q
    ||||||||| ||||||| | |||| ||||||||||| |||| || || ||||||||||||||||||||| ||||| |||||||||||||||||           
T  23744808 tatacggtagtgatttttatctttaggtgtaccgcatatatgcggcaccttgtatttatcttttaaaaaatttaattagaacattgttctttttaaaaaa 23744907  T
Q  134 ntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
     |||||||||||||| || ||  |||||||||||||| |||   |||| |||  ||||||||||||| |||||    
T  23744908 atacatttttatttttttacgggcctcttttcacttatagagctgagcctccaaattcgtaggaacggccctg 23744980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 18776867 - 18776764
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||| ||||||||||||||| | |||||||| | ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  18776867 ggtttctcatgtatacggtagtcattttcacatctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 18776768  T
Q  123 tttt 126  Q
    ||||    
T  18776767 tttt 18776764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 24525786 - 24525688
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgtt 121  Q
    |||||||||||||||||||| | |||||||| ||||||||||||||| ||| ||| || ||| ||||||||||||||||| | ||||||||||||||||    
T  24525786 ggttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatacacggcaccttatatttatcttttaaaaaatataaatagaacattgtt 24525688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 27237527 - 27237421
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||||| || |||||||||||||| | |  | | || |||||| ||| ||||||||||||||||||||| ||||||||||||||||    
T  27237527 tgaggttcctcatgtatacgatagtgattttcacctttagattcatcacatatatacaacaccttgtatttatcttttaaaaaatttaaatagaacattg 27237428  T
Q  120 ttctttt 126  Q
    |||||||    
T  27237427 ttctttt 27237421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 36891576 - 36891682
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||| | |||||| |||  ||||||| ||| |||||||| | |||||||||||||     
T  36891576 tgaggttcctcatgtatacggtagtgattttcacctttggatgtaccgaatatatacaacacattgtattcatcatttaaaaaatataaatagaacatta 36891675  T
Q  120 ttctttt 126  Q
    |||||||    
T  36891676 ttctttt 36891682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 10955485 - 10955588
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| || |||||||||| ||||||| || ||| ||||||||||||||||| | |||||||||||| | ||    
T  10955485 ggttcctcatgtatacggtagtcattttcacctctgagtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacatcgctc 10955584  T
Q  123 tttt 126  Q
    ||||    
T  10955585 tttt 10955588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 23551172 - 23551093
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaa 102  Q
    |||||||||||||||||||| | |||||||||||||| ||||||||| |||||||||| ||| |||||||||||||||||    
T  23551172 ggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacgacaccttatatttatcttttaaaaa 23551093  T

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Target: chr7; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 18201135 - 18201237
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||| || ||||| |||||||||| || |||||||| || ||||| | |||||||||||||| ||||||||| |||||||||| |||||    
T  18201135 tgaggttcctcatgtgtaaggtaacgattttcacccttaggtgtaccacatatatatggcatcttgtatttatattttaaaaaatttaaatagatcattg 18201234  T
Q  120 ttc 122  Q
    |||    
T  18201235 ttc 18201237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 26254017 - 26254097
Alignment:
Q  46 attttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    ||||||| |||||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||||||    
T  26254017 attttcatctttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 26254097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 19692095 - 19692198
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||  | | |||||||||||| ||||||||||| ||||| | || ||| ||||||||||||||||| | |||||||||||||| ||    
T  19692095 ggttcctcatgtatacgaaagtcattttcacctttaggtgtaccgcatatatatggcaccttatatttatcttttaaaaaatataaatagaacattgctc 19692194  T
Q  123 tttt 126  Q
    ||||    
T  19692195 tttt 19692198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 38414977 - 38414874
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||| ||| | ||||||||||||||||||||| || ||||||| || ||| ||||||||||||||||| |  ||||||||| ||| ||    
T  38414977 ggttcctcatgtatacagtagtcattttcacctttgggtgtaccacatatatacgtcaccttatatttatcttttaaaaaatacaaatagaacgttgctc 38414878  T
Q  123 tttt 126  Q
    ||||    
T  38414877 tttt 38414874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 12596388 - 12596294
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacat 117  Q
    ||||||||||| |||||||| | |||||||||| |||||||||| || ||||||| || ||||||||||||||| ||||| | ||||||||||||    
T  12596388 ggttcctcatgcatacggtagtcattttcacctctgggtgtaccacatatatacggcaccttgtatttatctttaaaaaaatataaatagaacat 12596294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 47985071 - 47984974
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatctttta-aaaattttaaatagaacattg 119  Q
    |||||||||||||||||||  | |||||||||||||||||||||||| ||||||| || ||| ||||| ||||||| |||| | ||||||||||||||    
T  47985071 ggttcctcatgtatacggtggtcattttcacctttgggtgtaccgcatatatacggcaccttatatttttcttttaaaaaaatataaatagaacattg 47984974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 10329511 - 10329415
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||| ||||||||||||||| | |||||||||||||||| | || || ||||||| || ||| ||||||||||||||||| | ||||||||||||||    
T  10329511 ggtttctcatgtatacggtagtcattttcacctttgggttttcctcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattg 10329415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 38971255 - 38971402
Alignment:
Q  24 gttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttct 123  Q
    ||||||| ||| ||||||| |||||||||| ||| ||||||   || |||||||||| ||||||||||||||||||||| |||||||| || |||| |||    
T  38971255 gttcctcgtgtttacggtagtgattttcacatttaggtgtataacatatatacgacaccttgtatttatcttttaaaaa-tttaaataaaatattgatct 38971353  T
Q  124 tttnnnnnnnntacatttttattttatttcgatcctcttttcacttaca 172  Q
    |||        ||||||||||||||||| ||   |||||||||||||||    
T  38971354 tttaaaaaaaatacatttttattttattacgggtctcttttcacttaca 38971402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 8239688 - 8239783
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    |||||||||| ||||||||||| |||||||| |||||||||||| || ||||||| ||  || ||||||| ||||||||| | |||||||||||||    
T  8239688 ggttcctcatatatacggtaatcattttcacatttgggtgtaccacatatatacggcacattatatttattttttaaaaaatataaatagaacatt 8239783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 20153206 - 20153297
Alignment:
Q  27 cctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    |||||||||||||| | ||||||||| |||||||| || |||| |||||| |||  |||||||||||||||||||| |||||||| ||||||    
T  20153206 cctcatgtatacggcagtgattttcatctttgggtttatcgcatatatacaacactttgtatttatcttttaaaaaatttaaataaaacatt 20153297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 33162417 - 33162338
Alignment:
Q  46 attttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttt 125  Q
    |||||||||||| ||||||||||| ||||||| || ||||||||||||||||||||| | |||||||| ||||| |||||    
T  33162417 attttcacctttaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagagcattgctcttt 33162338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 21763672 - 21763586
Alignment:
Q  39 ggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttt 125  Q
    |||| |||||||||| ||| |||||| |||| |||||||| |  |||||||||||||||||||| ||||||||||||| ||||||||    
T  21763672 ggtagtgattttcactttttggtgtatcgcatatatacgatactttgtatttatcttttaaaaaatttaaatagaacaatgttcttt 21763586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 28749715 - 28749813
Alignment:
Q  27 cctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    |||||||||||||||| | |||||||| | || |||||||||| ||||||| || |||||||||||||||| |||| | ||||||||| |||| ||||||    
T  28749715 cctcatgtatacggtagt-attttcacatctgagtgtaccgcatatatacggcaccttgtatttatcttttcaaaaatataaatagaatattgctctttt 28749813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 9014866 - 9014782
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaata 111  Q
    ||||||| ||||||||||||||| ||||||||||||||||||       | ||||||||||  |||||||||||||||| ||| ||||||||    
T  9014866 tgaggttactcatgtatacggtagtgattttcacctttgggt-------atatatacgacacattgtatttatcttttacaaaatttaaata 9014782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 25010434 - 25010479
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgc 68  Q
    |||||||||||||||||||| | |||||||||||||||||||||||    
T  25010434 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgc 25010479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 17800320 - 17800257
Alignment:
Q  25 ttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtat 88  Q
    ||||||||| |||||||| |||||||||| |||||||||||  || |||||||||| |||||||    
T  17800320 ttcctcatgcatacggtagtgattttcacttttgggtgtacaacatatatacgacaacttgtat 17800257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 9014219 - 9014177
Alignment:
Q  83 ttgtatttatcttttaaaaattttaaatagaacattgttcttt 125  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  9014219 ttgtatttatcttttaaaaaatttaaataaaacattgttcttt 9014177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 26917715 - 26917649
Alignment:
Q  140 ttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
    |||||||||||| ||  |||||||||||||||||| || ||| ||  |||||||| |||||||||||    
T  26917715 ttttattttattacggacctcttttcacttacagagtcaagcctctagattcgtaagaacgaccctg 26917649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 24035645 - 24035463
Alignment:
Q  25 ttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctt 124  Q
    |||||||||||| ||||| |||||||||||||| |||||| ||||  |||||| || ||||||||||||||||||||| |||||||||||||||||||||    
T  24035645 ttcctcatgtatgcggtagtgattttcacctttaggtgtatcgcatttatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgttctt 24035546  T
Q  125 ttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctgg 207  Q
    ||        ||| ||||||||||||| ||  | |||||||||||||| |||||||| |||||||||||||||| ||||||||    
T  24035545 ttaaaagaaatacgtttttattttattacgggcatcttttcacttacaaaatcgagcatccggattcgtaggaatgaccctgg 24035463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 16097005 - 16097188
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||| |||| | ||||||||||||||||||||  || ||||||| || ||||||||||||||||||||| ||||||||||||||||    
T  16097005 tgaggttcctcatgtataaggtagtaattttcacctttgggtgtacatcatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattg 16097104  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgacc 203  Q
    |||||||        ||||| ||||||||||| ||  || |||||||||||||||  ||||| |||  ||||||||||||||||    
T  16097105 ttcttttaaacaaaatacatatttattttattacgggccacttttcacttacagagccgagcctccaaattcgtaggaacgacc 16097188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 38400795 - 38400978
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||||||||| |||||||||||||||  |||| |||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  38400795 tgaggttcctcatgtatacggtagtgattttcacctttgaatgtatcgcatatatatgacaccttgtatttatcttttaaaaaatttaaatagaacattg 38400894  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgacc 203  Q
    ||||| |        ||  ||||||||||||| ||   |||||||||||||||||  ||| ||| |||||||||| ||||||||    
T  38400895 ttcttataaaaaatatatgtttttattttattgcgggtctcttttcacttacagagccgaactttcggattcgtaagaacgacc 38400978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 13800650 - 13800489
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcaccttt-gggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    ||||||||||| ||||||  ||| |||||||||||||| ||||||| |||| ||||||| || ||| ||||||||||||||||| |||||||||||||||    
T  13800650 tgaggttcctcgtgtatatagtagtgattttcaccttttgggtgtatcgcatatatacggcaccttatatttatcttttaaaaaatttaaatagaacatt 13800551  T
Q  119 gttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgag 180  Q
    ||||||||        ||||||||||||||||| ||| |||||||||||||||||| |||||    
T  13800550 gttctttttaaaaaaatacatttttattttattacgaacctcttttcacttacagagtcgag 13800489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 28425815 - 28425632
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||| |||| |||| |||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||||||||    
T  28425815 tgaggttcctcatatatatggtagtgattttcacatttgggtgtactgcatatatacgacaccttgtatttatcttttaaaatttttaaatagaacattg 28425716  T
Q  120 ttctttt---nnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacg 200  Q
    |||||||           ||||||||||||||||| ||  |||||||||| ||||| || ||||| || | |||||||||||||    
T  28425715 ttcttttaaaaaaaaaaatacatttttattttattacggacctcttttcatttacaaaaacgagcctctgaattcgtaggaacg 28425632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 21665802 - 21665620
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| |||||||||| ||| | |||| | || |||||||||| | ||||||||||||||||||| |||||||||||||||||||    
T  21665802 ggttcctcatgtatacggtagtgattttcacattttgatgtatcacatatatacgacaccgtgtatttatcttttaaaaaatttaaatagaacattgttc 21665703  T
Q  123 ttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
    ||||        ||||||||||||||||| ||   |||||||||||||||||  ||| | ||| ||||||||||||| ||||||    
T  21665702 tttt-aaaaaaatacatttttattttattacgggtctcttttcacttacagagccgaccctccagattcgtaggaacaaccctg 21665620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 29939964 - 29939861
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| |||||||||||||| |||||| | |||||||||||||| ||    
T  29939964 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttgtatttatcttgtaaaaaatataaatagaacattgctc 29939865  T
Q  123 tttt 126  Q
    ||||    
T  29939864 tttt 29939861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 12134145 - 12134039
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||| |||||||||||| |||||||||| |||||||||| |||| |||||||  | |||||||||||||||||||  |||||||||||||||||    
T  12134145 tgaggttcctaatgtatacggtagtgattttcacttttgggtgtatcgcatatatacggtaccttgtatttatcttttaaattttttaaatagaacattg 12134046  T
Q  120 ttctttt 126  Q
    |||||||    
T  12134045 ttctttt 12134039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 24410437 - 24410535
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgtt 121  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||| | ||||||||||||||||    
T  24410437 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtt 24410535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 9046029 - 9046133
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatctttt-aaaaattttaaatagaacattgtt 121  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||| || ||| |||||||||||| ||||| | ||||||||||||||||    
T  9046029 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaaatataaatagaacattgtt 9046128  T
Q  122 ctttt 126  Q
    |||||    
T  9046129 ctttt 9046133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 3155217 - 3155320
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| | ||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  3155217 ggttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 3155316  T
Q  123 tttt 126  Q
    ||||    
T  3155317 tttt 3155320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 4505894 - 4505997
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | ||||| |||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  4505894 ggttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 4505993  T
Q  123 tttt 126  Q
    ||||    
T  4505994 tttt 4505997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 6965007 - 6965110
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| ||||||||||||| ||||||| ||  |||||||||||||||||||| | |||||||||||||| ||    
T  6965007 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcactttgtatttatcttttaaaaaatataaatagaacattgctc 6965106  T
Q  123 tttt 126  Q
    ||||    
T  6965107 tttt 6965110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 12337550 - 12337447
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| |||||||||| || ||||| |||| ||||||||||||||||||||| | |||||||||||||| ||    
T  12337550 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccacatatatatgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 12337451  T
Q  123 tttt 126  Q
    ||||    
T  12337450 tttt 12337447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 3953006 - 3953100
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacat 117  Q
    ||||||||||| |||||||||| |||||||||| |||||||||||||  |||||| || ||||||||||||||||||||| | ||||||||||||    
T  3953006 ggttcctcatgcatacggtaatcattttcacctctgggtgtaccgcatgtatacggcaccttgtatttatcttttaaaaaatataaatagaacat 3953100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 10762667 - 10762565
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | ||||||||||||||||||||| || ||||||  || ||| ||||||||||||||||| | |||||||||||||| ||    
T  10762667 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccacatatataccgcaccttatatttatcttttaaaaaatataaatagaacattgctc 10762568  T
Q  123 ttt 125  Q
    |||    
T  10762567 ttt 10762565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 26716128 - 26716232
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatctttt-aaaaattttaaatagaacattgtt 121  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||| | || ||| |||||||||||| ||||| | |||||||||||||| |    
T  26716128 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatatggcaccttatatttatcttttaaaaaaatataaatagaacattgct 26716227  T
Q  122 ctttt 126  Q
    |||||    
T  26716228 ctttt 26716232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 16227473 - 16227368
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||| |||||||  ||| ||||||||| || | |||||| | || |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  16227473 tgaggttccttatgtatatagtagtgattttcatctatcggtgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaaaattg 16227374  T
Q  120 ttcttt 125  Q
    ||||||    
T  16227373 ttcttt 16227368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 40636164 - 40636241
Alignment:
Q  49 ttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||| | |||||||||||||| ||||||    
T  40636164 ttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 40636241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 7162784 - 7162887
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||| ||||||||| | |||||||||| || || ||||||| ||||||| || ||||||||||||||||||||| | |||||||||||| | ||    
T  7162784 ggttcctcatatatacggtagtcattttcacctctgagtataccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctc 7162883  T
Q  123 tttt 126  Q
    ||||    
T  7162884 tttt 7162887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 8907181 - 8907086
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    |||| ||||||||||||||| | ||||| |||| ||||||||||||| ||||||| |  ||||||||||||||||||||| | |||||||||||||    
T  8907181 ggtttctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcgccttgtatttatcttttaaaaaatataaatagaacatt 8907086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 42029166 - 42029329
Alignment:
Q  44 tgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttt----tnnnnnnnntacat 139  Q
    |||||||||||||| |||||||  ||  |||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||             |||||    
T  42029166 tgattttcacctttaggtgtacaacatgtatatgacaccttatatttatcttttaaaaaatttaaatagaacattgttctttaaaaaaaaaaaaatacat 42029265  T
Q  140 ttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgacc 203  Q
    |||||| ||||| ||| |||||||||||||||| || ||||| ||| ||||| |||||||||||    
T  42029266 ttttatattattacgaacctcttttcacttacaaaaccgagcctccagattcttaggaacgacc 42029329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 198
Target Start/End: Complemental strand, 22727497 - 22727384
Alignment:
Q  85 gtatttatcttttaaaaattttaaatagaacattgttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttc 184  Q
    |||||||||||||||||| |||||||||||||||||||||||        ||| ||||||||||||| |   |||||||||||||||||  |||||| ||    
T  22727497 gtatttatcttttaaaaaatttaaatagaacattgttcttttaaaaaaaatacgtttttattttattacttgcctcttttcacttacagcgtcgagcctc 22727398  T
Q  185 cggattcgtaggaa 198  Q
    || |||||||||||    
T  22727397 cgaattcgtaggaa 22727384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 37182667 - 37182739
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttat 92  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||  ||| |||||||||| |||||||||||    
T  37182667 tgaggttcctcatgtatacggtagtgattttcacttttgggtgtattgcatatatacgacaccttgtatttat 37182739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 7742239 - 7742132
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatctttta-aaaattttaaatagaacatt 118  Q
    |||||||||||||| ||||| || |  ||||||||||||| |||| |||| ||||| ||||  |||||||||||||||| |||| | |||||||||||||    
T  7742239 tgaggttcctcatgcatacgatagtatttttcacctttggatgtaacgcatatatatgacacattgtatttatcttttaaaaaaatataaatagaacatt 7742140  T
Q  119 gttctttt 126  Q
    ||||||||    
T  7742139 gttctttt 7742132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 27506841 - 27506746
Alignment:
Q  24 gttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||| ||| | ||||| ||||||||||||||| || ||||||| || ||| ||||||||||||||||| | |||||||| |||||    
T  27506841 gttcctcatgtatacagtagtcatttttacctttgggtgtaccacatatatacggcaccttatatttatcttttaaaaaatataaatagatcattg 27506746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 11912862 - 11912757
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||| |||||||||||| ||||||||| |||||| ||||  ||| ||||||| ||  |||||||||| ||||   || ||||||||||||||||    
T  11912862 tgaggttccttatgtatacggtagtgattttcatctttggatgtattgcatatatacggcactttgtatttatttttttttaaatttaaatagaacattg 11912763  T
Q  120 ttcttt 125  Q
    ||||||    
T  11912762 ttcttt 11912757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 34693998 - 34694078
Alignment:
Q  46 attttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    ||||| |||| |||||||||| || ||||||| || ||||||||||||||||||||| | |||||||||||||| ||||||    
T  34693998 attttgacctctgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 34694078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 34716410 - 34716490
Alignment:
Q  46 attttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    ||||| |||| |||||||||| || ||||||| || ||||||||||||||||||||| | |||||||||||||| ||||||    
T  34716410 attttgacctctgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 34716490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 5952791 - 5952716
Alignment:
Q  49 ttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    ||||||| ||||||||||||| ||||||| || |||||||||||||||||||||   |||||| ||||||| ||||||    
T  5952791 ttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa--ataaatataacattgctctttt 5952716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 22727598 - 22727530
Alignment:
Q  29 tcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatctttt 97  Q
    ||||||||| |||| |||||||||| ||||||||||||||| ||||||| ||  | |||||||||||||    
T  22727598 tcatgtatatggtagtgattttcacttttgggtgtaccgcatatatacgtcacatagtatttatctttt 22727530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 10252468 - 10252518
Alignment:
Q  75 acgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttt 125  Q
    |||||| ||||||||||||||||||||| ||||||| ||||||| ||||||    
T  10252468 acgacaccttgtatttatcttttaaaaaatttaaattgaacatttttcttt 10252518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 11952641 - 11952588
Alignment:
Q  71 atatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttt 125  Q
    ||||||||||  ||||||| |||||||||||| ||||||||||||||||||||||    
T  11952641 atatacgacactttgtatt-atcttttaaaaaatttaaatagaacattgttcttt 11952588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 7742115 - 7742055
Alignment:
Q  139 tttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaac 199  Q
    ||||||||||||  ||  ||||||||||||||||||| ||| | |||||||||||||||||    
T  7742115 tttttattttatcacgggcctcttttcacttacagaaccgaacctccggattcgtaggaac 7742055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 37182760 - 37182824
Alignment:
Q  139 tttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgacc 203  Q
    ||||||||||||| ||   |||||||||||||||||  ||||| ||||||||| |||||||||||    
T  37182760 tttttattttattacgggtctcttttcacttacagagccgagcctccggattcttaggaacgacc 37182824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 11952575 - 11952514
Alignment:
Q  139 tttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacg 200  Q
    ||||||||||||| ||   |||||||||||||||||| ||||| | | ||||||||||||||    
T  11952575 tttttattttattacgggtctcttttcacttacagaaccgagccttcagattcgtaggaacg 11952514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 12694794 - 12694855
Alignment:
Q  138 atttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaac 199  Q
    |||||||||||||| ||   |||||||||||||||||  ||||| |||||||||||| ||||    
T  12694794 atttttattttattacgggtctcttttcacttacagagccgagcctccggattcgtaagaac 12694855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 206594 - 206440
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||     
T  206594 tgaggttcctcatgtatacggtagtgattttcaccattgggtgtaccgcatatatacgacaccttgtatttatcttttacaaaatttaaatagaacattc 206495  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacaga 174  Q
    ||||||         ||||||||||||||||| | | ||||||||||||||||||    
T  206494 ttctttaaaaaaaaatacatttttattttattacaaacctcttttcacttacaga 206440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 45)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 207
Target Start/End: Complemental strand, 26719045 - 26718864
Alignment:
Q  26 tcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttt 125  Q
    ||||||||||| ||||| ||||||||||||||| ||||| |||| ||||||||||  |||||||||||||||||||||||||||||||||||| ||||||    
T  26719045 tcctcatgtatgcggtagtgattttcacctttgagtgtatcgcatatatacgacactttgtatttatcttttaaaaattttaaatagaacattattcttt 26718946  T
Q  126 tnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctgg 207  Q
             ||| ||||||||||||| ||   |||||||||||||||||| ||||| ||||||||| |||||||| ||||||    
T  26718945 aaaaaaaaatacgtttttattttattacgggtctcttttcacttacagaaccgagcctccggattcataggaacggccctgg 26718864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 207
Target Start/End: Complemental strand, 26988789 - 26988608
Alignment:
Q  26 tcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttt 125  Q
    ||||||||||| ||||| ||||||||||||||| ||||| |||| ||||||||||  |||||||||||||||||||||||||||||||||||| ||||||    
T  26988789 tcctcatgtatgcggtagtgattttcacctttgagtgtatcgcatatatacgacactttgtatttatcttttaaaaattttaaatagaacattattcttt 26988690  T
Q  126 tnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctgg 207  Q
             ||| ||||||||||||| ||   |||||||||||||||||| ||||| ||||||||| |||||||| ||||||    
T  26988689 aaaaaaaaatacgtttttattttattacgggtctcttttcacttacagaaccgagcctccggattcataggaacggccctgg 26988608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 33037778 - 33037958
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||||||||||| |||||||||||||||||||  || |||||||| ||||||||||||||||||||||| |||||||| |||||||    
T  33037778 tgaggttcctcatgtatacggtaatggttttcacctttgggtgtacaacatatatacgatatcttgtatttatcttttaaaaaatttaaataaaacattg 33037877  T
Q  120 ttctttt--nnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaa 198  Q
    |||||||          ||||||||||||||||| ||| |||||||||  |||||||  ||||| || | |||||||||||    
T  33037878 ttcttttaaaaaatatatacatttttattttattacgagcctcttttcggttacagagccgagcctctgaattcgtaggaa 33037958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 11242420 - 11242235
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||||||||| |||||| || |||||| |||| | || ||||||  ||| ||||||||||||||||||||  |||||||||||||||    
T  11242420 tgaggttcctcatgtatacggtagtgatttccatctttggttgtatcacatatatacatcattttgtatttatcttttaaaaaaattaaatagaacattg 11242321  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
    |||||||        ||| ||||||||||||| |||  |||||||||||||||||  ||||| ||||||||| ||||||||||||||    
T  11242320 ttctttt-aaaagaatacgtttttattttattacgagtctcttttcacttacagagccgagcctccggattcataggaacgaccctg 11242235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 2530999 - 2530846
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||||| ||| |||||||||||||||| ||||||| | ||||||||||  ||||||||||||||||||||  ||||||||||||||     
T  2530999 tgaggttcctcatgtatacagtagtgattttcacctttggatgtaccgtatatatacgacacattgtatttatcttttaaaaaacttaaatagaacatt- 2530901  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacaga 174  Q
    |||||||        ||||||||||||||||| ||  ||||||||||||||||||    
T  2530900 ttcttttaagaaaaatacatttttattttattacgggcctcttttcacttacaga 2530846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 36868978 - 36868872
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||| || |||||||||| |||||||||||||||||||||  |||||||||||||||    
T  36868978 tgagattcctcatgtatacggtagtgattttcacatttgggtgtaccacatatatacgacaccttgtatttatcttttaaaaaaattaaatagaacattg 36868879  T
Q  120 ttctttt 126  Q
    |||||||    
T  36868878 ttctttt 36868872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 1366629 - 1366473
Alignment:
Q  19 atgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    |||||||||||||| ||||||||| |||||||||| ||| |||||| |||| |||||| |||||||||||||||||| |||||| |||||||||||||||    
T  1366629 atgaggttcctcatatatacggtagtgattttcacatttaggtgtatcgcatatataccacatcttgtatttatcttataaaaaatttaaatagaacatt 1366530  T
Q  119 gttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaa 175  Q
    ||||||||        ||| |||||||||| || ||  |||||||| ||||||||||    
T  1366529 gttcttttaaaaaaaatacgtttttatttttttacggacctctttttacttacagaa 1366473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 34425901 - 34426076
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||||||||||||||||| | |||| |||||| | || ||||||| || ||||||||||||||||||||| || |||||||||||||    
T  34425901 tgaggttcctcatgtatacggtaatgattttaatctttaggtgtatcacatatatacggcaccttgtatttatcttttaaaaaattgaaatagaacattg 34426000  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtag 195  Q
    |||||||        ||||||||||||||||| |    || ||||||||||||||| ||||| | | |||||||||    
T  34426001 ttcttttaaaaaagatacatttttattttattacatgtcttttttcacttacagaaccgagccttcagattcgtag 34426076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 14318487 - 14318382
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||||||||| |||||||||  ||||| |||| | || |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  14318487 tgaggttcctcatgtatacggtagtgattttcatttttggatgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattg 14318388  T
Q  120 ttcttt 125  Q
    ||||||    
T  14318387 ttcttt 14318382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 34756465 - 34756362
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  34756465 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 34756366  T
Q  123 tttt 126  Q
    ||||    
T  34756365 tttt 34756362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 38869462 - 38869359
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||| ||||||||||||||| | |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| | |||||||||||||| ||    
T  38869462 ggtttctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgctc 38869363  T
Q  123 tttt 126  Q
    ||||    
T  38869362 tttt 38869359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 15480188 - 15480094
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacat 117  Q
    ||||||||||| |||||||| | |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||    
T  15480188 ggttcctcatgcatacggtagtcattttcacctctgggtgtaccgcatatatacgacatcttgtatttatcttttaaaaaatataaatagaacat 15480094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 9364292 - 9364388
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||| | ||||||||||||||    
T  9364292 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattg 9364388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 16198893 - 16198797
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||||| | ||||||||||||||||||| |||| |||||||||| ||| ||||||||||||||||| | ||||||||||||||    
T  16198893 ggttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattg 16198797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 16799426 - 16799331
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||| ||||||| ||||||||| | |||||||||||||    
T  16799426 ggttcctcatgtatacggtaatcattttcacctttgggtgtaccgcatatatacggcaccttatatttattttttaaaaaatataaatagaacatt 16799331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 27079012 - 27079115
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||| ||| | |||||||||||| ||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  27079012 ggttcctcatgtatacagtagtcattttcacctttaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 27079111  T
Q  123 tttt 126  Q
    ||||    
T  27079112 tttt 27079115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 28822441 - 28822338
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||| | |||||||||||||| ||    
T  28822441 ggttcatcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 28822342  T
Q  123 tttt 126  Q
    ||||    
T  28822341 tttt 28822338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 2412086 - 2412191
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||||| ||| |||||||||| ||||| || | |||| ||||||||||  |||||||||| ||||||||| ||||||||||||||||    
T  2412086 tgaggttcctcatgtatacagtagtgattttcacatttggatgcatcgcatatatacgacactttgtatttattttttaaaaaatttaaatagaacattg 2412185  T
Q  120 ttcttt 125  Q
    ||||||    
T  2412186 ttcttt 2412191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 10407464 - 10407645
Alignment:
Q  25 ttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctt 124  Q
    ||||||||| |||||||| | |||||||| ||| | |||||  || || ||||||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  10407464 ttcctcatgcatacggtagtaattttcacttttagatgtacaacatatgtacgacaccttgtgtttatcttttaaaaaatttaaatagaacattgttctt 10407563  T
Q  125 ttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
    ||        ||| |||||||||||||  |  |||||||||||||| |||| ||| | ||  ||||||||||||||||||||    
T  10407564 ttaaaaaaaatacttttttattttattatggacctcttttcacttatagaaccgaacctctagattcgtaggaacgaccctg 10407645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 16592173 - 16592070
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||| ||||||||| | |||||||||| ||||||||||||| |||||||||| | ||||||||||||||| ||| | |||||||||||||| ||    
T  16592173 ggttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccctgtatttatcttttagaaaatataaatagaacattgctc 16592074  T
Q  123 tttt 126  Q
    ||||    
T  16592073 tttt 16592070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 23284161 - 23284058
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | ||||||| |||||||||||||||| |||||||||| ||||||||||   |||||||| | |||||||||||||| ||    
T  23284161 ggttcctcatgtatacggtagtcattttcatctttgggtgtaccgcatatatacgacaccttgtatttagtctttaaaaaatataaatagaacattgctc 23284062  T
Q  123 tttt 126  Q
    ||||    
T  23284061 tttt 23284058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 30854330 - 30854433
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    ||||||||||||||||| || | |||||||||| || |||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  30854330 ggttcctcatgtatacgatagtcattttcacctctgagtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 30854429  T
Q  123 tttt 126  Q
    ||||    
T  30854430 tttt 30854433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 2024744 - 2024638
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||| |||||||||||| |||| ||||||||| ||||||||||| | || ||||||| ||  |||||||||||||| ||||| ||||||||||||||||    
T  2024744 tgaggatcctcatgtatatggtagtgattttcatctttgggtgtatcacatatatacggcacattgtatttatctttaaaaaaatttaaatagaacattg 2024645  T
Q  120 ttctttt 126  Q
    |||||||    
T  2024644 ttctttt 2024638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 19523200 - 19523293
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaaca 116  Q
    ||||||||||||||| |||| | |||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||    
T  19523200 ggttcctcatgtatatggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaaca 19523293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 36187980 - 36187875
Alignment:
Q  21 gaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgt 120  Q
    |||||| ||||||||||||||| | |||||||||| ||||||||||||| ||||||| || ||||||||||| ||||||||| | |||||||||||| |     
T  36187980 gaggtttctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatattttaaaaaatataaatagaacatcgc 36187881  T
Q  121 tctttt 126  Q
    ||||||    
T  36187880 tctttt 36187875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 40389635 - 40389539
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||  |||||||| | |||||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||| | ||||||||||||||    
T  40389635 ggttcctcataaatacggtagtcattttcacctttggatgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattg 40389539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 2274891 - 2274994
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||| ||||||||||| | |||||||||| ||||||||| ||| |||||||| | ||||||||||||||||||||| | |||||||||||| | ||    
T  2274891 ggttcctcgtgtatacggtagtcattttcacctctgggtgtactgcatatatacgataccttgtatttatcttttaaaaaatataaatagaacatcgctc 2274990  T
Q  123 tttt 126  Q
    ||||    
T  2274991 tttt 2274994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 7338023 - 7338102
Alignment:
Q  46 attttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttt 125  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| | |||||||||||||| |||||    
T  7338023 attttcacctttaggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 7338102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 22986657 - 22986554
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||| ||||||||||||||| | |||||||||| ||||||||||||| ||||||||||  |||||||| ||||||||||| | | |||||||||||| ||    
T  22986657 ggtttctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacgacactttgtatttgtcttttaaaaaatattaatagaacattgctc 22986558  T
Q  123 tttt 126  Q
    ||||    
T  22986557 tttt 22986554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 31194706 - 31194608
Alignment:
Q  27 cctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    |||||||||||||||| | |||||||||| ||||| ||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||||||    
T  31194706 cctcatgtatacggtagt-attttcacctctgggtttaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 31194608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 41911719 - 41911614
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||| |||||| || ||||||| || ||||||||||||||  |||||||||| ||||||||| |||||||||||  |||| | ||||||||    
T  41911719 tgaggttcctcatatatacgatagtgatttttacttttgggtgtaccgcttatatacgacaccttgtatttctcttttaaaaaaattaagttgaacattg 41911620  T
Q  120 ttcttt 125  Q
    ||||||    
T  41911619 ttcttt 41911614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 22648838 - 22648734
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||| || || ||||| ||| ||||| |||||||||| ||| || || ||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  22648838 tgaggtttcttatttatacagtagtgattgtcacctttggatgtgccacatatatacgacacattgtatttatcttttaaaaaatttaaatagaacattg 22648739  T
Q  120 ttctt 124  Q
    |||||    
T  22648738 ttctt 22648734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 40794429 - 40794249
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||| |  | || |||| |   |||||||| ||||||||||| |||||||| |||||||    
T  40794429 tgaggtttctcatgtatacggtagtgattttcaccttttggtgtatcatatatttacggctctttgtatttgtcttttaaaaaatttaaataaaacattg 40794330  T
Q  120 ttcttttnnnnnnnnta-catttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaac 199  Q
    |||||||         | | ||||||||||||| ||| ||||||||||||||||||  ||||| |||| ||||||| ||||    
T  40794329 ttcttttaaaaaaaaaaacgtttttattttattacgagcctcttttcacttacagagccgagcctccgaattcgtatgaac 40794249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 24395741 - 24395835
Alignment:
Q  24 gttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    ||||||||| ||||||||  |||||||||||||||| ||||  | | |||||| ||| ||||||||||||||||||||| |||||||||||||||    
T  24395741 gttcctcatctatacggtggtgattttcacctttggatgtattgtatatatacaacaccttgtatttatcttttaaaaaatttaaatagaacatt 24395835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 7670929 - 7671022
Alignment:
Q  27 cctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatctttt-aaaaattttaaatagaacattg 119  Q
    |||||||||||||||| | |||||||||||||||||||||| | ||||||| || ||| |||||||||||| ||||| | ||||||||||||||    
T  7670929 cctcatgtatacggtagtcattttcacctttgggtgtaccgtaaatatacggcaccttatatttatcttttaaaaaaatataaatagaacattg 7671022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 27924084 - 27924172
Alignment:
Q  24 gttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatag 112  Q
    ||||||||||||||||||| | ||||| |||||||| ||||||||| ||||||| || ||| ||||||||||||||||| | |||||||    
T  27924084 gttcctcatgtatacggtagtcatttttacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatag 27924172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 10543682 - 10543776
Alignment:
Q  31 atgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttt 125  Q
    |||||||||||| |||||||||||||||| |||| |||| ||||||  || ||| ||||||||||||||||| ||||| | ||||||| ||||||    
T  10543682 atgtatacggtagtgattttcacctttggatgtatcgcatatatacatcaccttatatttatcttttaaaaaatttaagtggaacattattcttt 10543776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 206
Target Start/End: Complemental strand, 35080806 - 35080688
Alignment:
Q  86 tatttatcttttaaaaattttaaatagaacattgttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttcc 185  Q
    ||||||||||||||||| |||||||| ||||||||||||||        ||  ||||||||||||| ||  |||||||||||||||||| |||||| ||     
T  35080806 tatttatcttttaaaaaatttaaataaaacattgttcttttaaaaaaaata--tttttattttattacggccctcttttcacttacagagtcgagcctct 35080709  T
Q  186 ggattcgtaggaacgaccctg 206  Q
     |||||||||||||| |||||    
T  35080708 agattcgtaggaacggccctg 35080688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 17344969 - 17345060
Alignment:
Q  35 atacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    |||||||| | ||||| | |||||||||||||||| ||| | ||||||||||||||||  | |||||| |||||||||||||||||| ||||    
T  17344969 atacggtagtaatttttatctttgggtgtaccgcatatacatgacatcttgtatttattatataaaaaatttaaatagaacattgttatttt 17345060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 31881528 - 31881430
Alignment:
Q  27 cctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    |||||||||||||||| | ||||||| || ||| ||| ||||| ||||||| || | ||||||||||||||||||| | |||||||||||||| ||||||    
T  31881528 cctcatgtatacggtagt-attttcatctctggatgttccgcatatatacggcaccgtgtatttatcttttaaaaaatataaatagaacattgctctttt 31881430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 606209 - 606258
Alignment:
Q  77 gacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  606209 gacaccttgtatttatcttttaaaaaatttaaatagaacattgttctttt 606258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 15639643 - 15639723
Alignment:
Q  22 aggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaa 102  Q
    |||||||| |||||||||  | ||||||||| |||||| |||| |||| ||||||| || ||||||||||||||| |||||    
T  15639643 aggttccttatgtatacgacagtgattttcatctttggatgtatcgcatatatacgtcaccttgtatttatctttaaaaaa 15639723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 27530543 - 27530587
Alignment:
Q  82 cttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    |||||||| |||||||||||| |||||||||||||||||||||||    
T  27530543 cttgtattaatcttttaaaaaatttaaatagaacattgttctttt 27530587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 22875003 - 22875041
Alignment:
Q  83 ttgtatttatcttttaaaaattttaaatagaacattgtt 121  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  22875003 ttgtatttatcttttaaaaaatttaaatagaatattgtt 22875041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 27530608 - 27530678
Alignment:
Q  136 acatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
    |||||||||||||||| ||  |||||||||||||| |||| ||||| ||   ||||||||||||| |||||    
T  27530608 acatttttattttattacgggcctcttttcacttatagaaccgagcctctaaattcgtaggaacggccctg 27530678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 54)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 36118561 - 36118377
Alignment:
Q  21 gaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgt 120  Q
    |||||| ||||||||||||||| |||||||||  |||||||||| | || |||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  36118561 gaggttactcatgtatacggtagtgattttcatatttgggtgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgt 36118462  T
Q  121 tcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
    || |||        ||| ||||||||||||| ||| |||||||||||||||| |  |||||||||| ||||||||||||| |||||    
T  36118461 tcattt-aaaaaaatacgtttttattttattacgagcctcttttcacttacaaagccgagcttccgaattcgtaggaacggccctg 36118377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 35779427 - 35779325
Alignment:
Q  22 aggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgtt 121  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | | |||||||||||| |    
T  35779427 aggttcctcatgtatacggtaatcattttcacctttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatat-aatagaacattgct 35779329  T
Q  122 cttt 125  Q
    ||||    
T  35779328 cttt 35779325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 39329492 - 39329317
Alignment:
Q  24 gttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttct 123  Q
    ||||||| |||||||||||  |||||||| ||||||||||| | || |||||| ||| ||||||||||||||||||||| |||||| |||||||||||||    
T  39329492 gttcctcctgtatacggtatggattttcatctttgggtgtatcacatatatacaacaccttgtatttatcttttaaaaaatttaaagagaacattgttct 39329393  T
Q  124 tttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaac 199  Q
    |||        ||  ||||||||||||| ||  ||||||||||||||||||| ||||| |||  ||||||||||||    
T  39329392 tttaaaaaaaatatgtttttattttattacggacctcttttcacttacagaaccgagcctccaaattcgtaggaac 39329317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 54780783 - 54780886
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  54780783 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 54780882  T
Q  123 tttt 126  Q
    ||||    
T  54780883 tttt 54780886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 39655337 - 39655172
Alignment:
Q  41 taatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc-ttttnnnnnnnntacat 139  Q
    ||||||||||||||||||||||||||||| |||| ||  |  |||||||||||||||||||| ||||||||||||||||||| ||||         || |    
T  39655337 taatgattttcacctttgggtgtaccgcatatatgcggaactttgtatttatcttttaaaaaatttaaatagaacattgttctttttaaaaatagaacgt 39655238  T
Q  140 ttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccct 205  Q
    |||||||||||| ||| ||||||||||| |||||| |||||| ||| |||| ||||||||||||||    
T  39655237 ttttattttattacgagcctcttttcacctacagagtcgagcctccagatttgtaggaacgaccct 39655172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 2790842 - 2790739
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| |||||||  | ||| ||||||||||||||||| | |||||||||||||||||    
T  2790842 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatttatcttttaaaaaatataaatagaacattgttc 2790743  T
Q  123 tttt 126  Q
    ||||    
T  2790742 tttt 2790739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 10978906 - 10979009
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||| | |||||||||||||| ||    
T  10978906 ggttcctcatgtatacggtagtcattttcacttctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 10979005  T
Q  123 tttt 126  Q
    ||||    
T  10979006 tttt 10979009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 27112033 - 27112212
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||| |||| ||||| | || ||||||||||||||||||||| ||||||| ||||||||    
T  27112033 tgaggttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtcaccttgtatttatcttttaaaaaatttaaattgaacattg 27112132  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacg 200  Q
    ||| |||        |||| | |||||||||| ||   |||||||||||||||||| ||||| ||| |||| |||||||||    
T  27112133 ttcgttt-aaaaaaatacaatcttattttattacgggtctcttttcacttacagaaccgagcctccagatttgtaggaacg 27112212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 34768675 - 34768572
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| || ||| ||||||||||||||||| | |||||||||||||| ||    
T  34768675 ggttcctcatgtatacggtaatcattttcacctctgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 34768576  T
Q  123 tttt 126  Q
    ||||    
T  34768575 tttt 34768572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 43455632 - 43455529
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||| | |||||||||||||| ||    
T  43455632 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 43455533  T
Q  123 tttt 126  Q
    ||||    
T  43455532 tttt 43455529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 47128993 - 47129096
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | ||||| |||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||||||    
T  47128993 ggttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgttc 47129092  T
Q  123 tttt 126  Q
    ||||    
T  47129093 tttt 47129096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 38209692 - 38209590
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  38209692 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 38209593  T
Q  123 ttt 125  Q
    |||    
T  38209592 ttt 38209590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 52468289 - 52468395
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||   || ||||||| || ||||||||||||||||||||| ||||||||||||||||    
T  52468289 tgaggttcctcatgcatacggtagtgattttcacctttggatgtataacatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattg 52468388  T
Q  120 ttctttt 126  Q
    |||||||    
T  52468389 ttctttt 52468395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 34027585 - 34027681
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||| ||| | |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| | ||||||||||||||    
T  34027585 ggttcctcatgtataccgtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattg 34027681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 32128598 - 32128693
Alignment:
Q  31 atgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    |||||||||||| | |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| | |||||||||||||| ||||||    
T  32128598 atgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgctctttt 32128693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 37777324 - 37777229
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||| | |||||||||||||    
T  37777324 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacatt 37777229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 36178684 - 36178778
Alignment:
Q  29 tcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttct 123  Q
    ||||||||| |||| |||||||||| |||||||||| |||| |||||||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  36178684 tcatgtataaggtagtgattttcacatttgggtgtatcgcatatatacgacaccttgtatttatcttttaaataatttaaatagaacattgttct 36178778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 51692021 - 51691838
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttg--ggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacat 117  Q
    |||||||| || |||||| |||| |||||||||| |||   ||||||||||| ||||||| || ||||||||||||||||||||| ||||||||||||||    
T  51692021 tgaggttcatcgtgtatatggtagtgattttcactttttttggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacat 51691922  T
Q  118 tgttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
    || ||||||        |||||     ||||||| ||| ||||||||||||| ||||  ||||| |||||||||||||||||| |||||    
T  51691921 tgctcttttaaaaaaaatacat-----ttttattacgagcctcttttcacttgcagagccgagcctccggattcgtaggaacggccctg 51691838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 32915391 - 32915494
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||||| ||||| |||| |||||||||| || ||||||| || ||||||||||||||||||||| | |||||||||||| | ||    
T  32915391 ggttcctcatgtatacggtaatcatttttacctctgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctc 32915490  T
Q  123 tttt 126  Q
    ||||    
T  32915491 tttt 32915494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 4167995 - 4167913
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaa 102  Q
    |||||||||||||||||| |||| ||||||||||||||||||||| |||| ||||||| || |||||||||||||||||||||    
T  4167995 tgaggttcctcatgtataaggtagtgattttcacctttgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaa 4167913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 2135425 - 2135324
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||| |||||| || |||| || |||||||| |||| |||| |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  2135425 tgaggttcctcatatatacgatagtgatgtttacctttggatgtatcgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaatattg 2135326  T
Q  120 tt 121  Q
    ||    
T  2135325 tt 2135324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 30507162 - 30507036
Alignment:
Q  84 tgtatttatcttttaaaaattttaaatagaacattgttcttttnnnnnnnn---tacatttttattttatttcgatcctcttttcacttacagaatcgag 180  Q
    ||||||||||||||||||| |||||||||||||||||||||||           |||||||||||||||||  |   ||||||||||||||| |||||||    
T  30507162 tgtatttatcttttaaaaaatttaaatagaacattgttcttttaaaaaaaaaaatacatttttattttattatgggtctcttttcacttacaaaatcgag 30507063  T
Q  181 cttccggattcgtaggaacgaccctgg 207  Q
    | |||||||||||||||||||||||||    
T  30507062 cctccggattcgtaggaacgaccctgg 30507036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 40217235 - 40217411
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||| |||||||||| | |||||||||||| |||||| |||| |||| |||||||||| ||| ||||||||||||||||| |||||||||   | ||    
T  40217235 tgaggttactcatgtatatgctaatgattttcatctttggatgtatcgcatatatacgacaccttatatttatcttttaaaaaatttaaatag--taatg 40217332  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaa 198  Q
    ||||||          || ||||||||||||| ||| |||||||||||||||| || ||||| || | |||||||||||    
T  40217333 ttctttaaaaaaaaaaacgtttttattttattacgagcctcttttcacttacaaaaccgagcctctgaattcgtaggaa 40217411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 48209246 - 48209349
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||| ||||||||||||||| | || ||||| | ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  48209246 ggtttctcatgtatacggtagtcatattcacatctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 48209345  T
Q  123 tttt 126  Q
    ||||    
T  48209346 tttt 48209349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 54083343 - 54083240
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | ||||| | |||||||||||||||| ||||||| || ||| ||||||||||||||||| | |||||||| |||||||     
T  54083343 ggttcctcatgtatacggtagtcatttttatctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagatcattgttt 54083244  T
Q  123 tttt 126  Q
    ||||    
T  54083243 tttt 54083240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 10042104 - 10041998
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||| ||||||||||| |||||||||| ||| |||||| | || | ||||| || ||||||||||| |||| |||| ||||||||||||||||    
T  10042104 tgaggttcctcctgtatacggtagtgattttcacatttaggtgtatcacatacatacggcaccttgtatttatttttttaaaaatttaaatagaacattg 10042005  T
Q  120 ttctttt 126  Q
    |||||||    
T  10042004 ttctttt 10041998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 24396937 - 24397043
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||||| || ||||||||||||||| ||||| | || ||||||  || ||| ||||||||||||||||| |||||||| || ||||    
T  24396937 tgaggttcctcatgtatacgatagtgattttcacctttgagtgtatcacatatatactgcaccttatatttatcttttaaaaaatttaaataaaatattg 24397036  T
Q  120 ttctttt 126  Q
    |||||||    
T  24397037 ttctttt 24397043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 37745014 - 37744916
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatctttta-aaaattttaaatagaacat 117  Q
    |||||||||||| |||||||||| |||||||||||||||| |||| |||| |||| ||||| ||| ||||||||||||| |||| ||||||||||||||    
T  37745014 tgaggttcctcaagtatacggtagtgattttcacctttggatgtatcgcatatatgcgacaccttatatttatcttttaaaaaaatttaaatagaacat 37744916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 5128945 - 5128852
Alignment:
Q  21 gaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaa 114  Q
    |||||||||||||||||||||| | |||||||||| |||||| || ||| ||||||| || ||||||||||||||||||||| | |||||||||    
T  5128945 gaggttcctcatgtatacggtagtcattttcacctctgggtgcactgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaa 5128852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 13460213 - 13460306
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaaca 116  Q
    ||||||| |||||||||||| | |||||||| | ||||| ||||||| |||||||||| ||||||||||||||||||||| | |||||||||||    
T  13460213 ggttccttatgtatacggtagtcattttcacatctgggtataccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaaca 13460306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 16845027 - 16845131
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatctttt-aaaaattttaaatagaacattgtt 121  Q
    |||||||||||||||||||| | ||||||||| ||||||||||  || |||||||||| ||| |||||||||||| ||||| | |||||||||||||| |    
T  16845027 ggttcctcatgtatacggtagtcattttcaccgttgggtgtactacatatatacgacaccttatatttatcttttaaaaaaatataaatagaacattgct 16845126  T
Q  122 ctttt 126  Q
    |||||    
T  16845127 ctttt 16845131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 19498510 - 19498611
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||| ||| | |||||||||||||| |||||||||  |||||| || ||| ||||||||||||||||| | |||||||||||||| ||    
T  19498510 ggttcctcatgtatacagtagtcattttcacctttggctgtaccgca--tatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 19498607  T
Q  123 tttt 126  Q
    ||||    
T  19498608 tttt 19498611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 37514671 - 37514759
Alignment:
Q  29 tcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacat 117  Q
    |||||||||||||| | |||||||||| || |||||||||| ||||||| || ||||||||||||||||||||| | ||||||||||||    
T  37514671 tcatgtatacggtagtcattttcacctctgagtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 37514759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 40089522 - 40089602
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaat 103  Q
    |||||||||||||||||||| | |||||||||||||| ||||||||| ||||||| || ||| ||||||||||||||||||    
T  40089522 ggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaat 40089602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 15735102 - 15735196
Alignment:
Q  24 gttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttct 123  Q
    |||||||||||||||||||||||||||||  ||| ||||||      ||||||||| |||||||||||||||||||||| ||||||||||||| ||||||    
T  15735102 gttcctcatgtatacggtaatgattttcattttttggtgtat-----atatacgacgtcttgtatttatcttttaaaaaatttaaatagaacactgttct 15735196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 1105538 - 1105632
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacat 117  Q
    |||| |||||||||| |||| | |||||||||| | ||||||||||| |||||||| | ||||||||||||||||||||| | ||||||||||||    
T  1105538 ggttgctcatgtatatggtagtcattttcacctctaggtgtaccgcatatatacgataccttgtatttatcttttaaaaaatataaatagaacat 1105632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 35465115 - 35465215
Alignment:
Q  25 ttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctt 124  Q
    |||||||||||||||||| | |||||||| ||| ||||||||||| ||||||| || ||| |||||||||| |||||| | |||||| ||||||||||||    
T  35465115 ttcctcatgtatacggtagttattttcacttttaggtgtaccgcatatatacg-caccttttatttatcttgtaaaaaatataaatataacattgttctt 35465213  T
Q  125 tt 126  Q
    ||    
T  35465214 tt 35465215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 10428273 - 10428202
Alignment:
Q  48 tttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | ||||||||||||||    
T  10428273 tttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattg 10428202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 36362974 - 36362869
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||| ||||||| |||| |||||| ||| ||||||||||  ||| ||||||| ||  |||||||||||||||||||| |||||| ||| |||||    
T  36362974 tgaggttcct-atgtatatggtagtgatttccacatttgggtgtattgcatatatacggcactttgtatttatcttttaaaaaatttaaacagagcattg 36362876  T
Q  120 ttctttt 126  Q
    |||||||    
T  36362875 ttctttt 36362869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 17679432 - 17679509
Alignment:
Q  49 ttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    ||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | ||||||||| |||| ||||||    
T  17679432 ttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaatattgctctttt 17679509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 45656178 - 45656279
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||| ||||||||||| |  |||||||||| ||||| | || |||| ||||| |||| |||| |||||||||||||||| |||||||| |||||||    
T  45656178 tgaggttcgtcatgtatacgttcgtgattttcacatttggatttatcgcatatatatgacaccttgcatttatcttttaaaaaatttaaataaaacattg 45656277  T
Q  120 tt 121  Q
    ||    
T  45656278 tt 45656279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 16882484 - 16882393
Alignment:
Q  35 atacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    |||||||| | |||||||||||| ||||||||| | ||| ||| || ||| ||||||||||||||||| | |||||||||||||||| ||||    
T  16882484 atacggtagtcattttcaccttttggtgtaccgtatatacacggcaccttatatttatcttttaaaaagtataaatagaacattgttttttt 16882393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 16922407 - 16922327
Alignment:
Q  46 attttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    |||||||||||||||  ||| ||| ||||||||||  || ||||||||||||||||| | |||||||||||||| ||||||    
T  16922407 attttcacctttggggatactgcatatatacgacactttatatttatcttttaaaaaatataaatagaacattgctctttt 16922327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 24614018 - 24614061
Alignment:
Q  82 cttgtatttatcttttaaaaattttaaatagaacattgttcttt 125  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  24614018 cttgtatttatcttttaaaaaatttaaatagaacattgttcttt 24614061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 4167907 - 4167846
Alignment:
Q  139 tttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacg 200  Q
    ||||||||||||| ||  |||||||||||||||| |||||||| |||||||||||| |||||    
T  4167907 tttttattttattacgggcctcttttcacttacaaaatcgagcctccggattcgtacgaacg 4167846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 24969443 - 24969488
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgc 68  Q
    |||||||||||||||||||| | |||||||||||||||||||||||    
T  24969443 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgc 24969488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 51964737 - 51964820
Alignment:
Q  46 attttcacctttgggtgtaccgcacatatacgacatcttgtatttatctttt---aaaaattttaaatagaacattgttctttt 126  Q
    |||||||||| |||||||| |||| ||||||| || ||||||||||||||||   ||||| | |||||||||||||| ||||||    
T  51964737 attttcacctctgggtgtatcgcatatatacggcaccttgtatttatctttttaaaaaaaatataaatagaacattgctctttt 51964820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 23508565 - 23508515
Alignment:
Q  70 catatacgacatcttgtatttatctttta-aaaattttaaatagaacattg 119  Q
    ||||||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  23508565 catatacgacaccttgtatttatcttttaaaaaattataaatagaacattg 23508515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 38352356 - 38352311
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgc 68  Q
    ||||||||||||| |||||| | |||||||||||||||||||||||    
T  38352356 ggttcctcatgtacacggtagtcattttcacctttgggtgtaccgc 38352311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 9578706 - 9578662
Alignment:
Q  82 cttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    ||||||||||||||||||||| | |||||||||||||| ||||||    
T  9578706 cttgtatttatcttttaaaaaatataaatagaacattgctctttt 9578662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 5893130 - 5893201
Alignment:
Q  135 tacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
    ||||||||||||||||| ||  ||||||||||||||||||  ||||| |||  ||| ||||||||| |||||    
T  5893130 tacatttttattttattacggacctcttttcacttacagagccgagcctccaaatttgtaggaacggccctg 5893201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 11906891 - 11906826
Alignment:
Q  135 tacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacg 200  Q
    ||||||||||||||||| ||  |||||||||||||| | |  ||||| |||| |||||||||||||    
T  11906891 tacatttttattttattacgggcctcttttcacttatatagccgagcctccgaattcgtaggaacg 11906826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 23509899 - 23509846
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatac 76  Q
    |||||||||||| ||||||| | |||||||||| | ||||||||||| ||||||    
T  23509899 ggttcctcatgtctacggtagtcattttcacctctaggtgtaccgcatatatac 23509846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 55255322 - 55255366
Alignment:
Q  82 cttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    ||||||||||||||||||||| | ||||| |||||||| ||||||    
T  55255322 cttgtatttatcttttaaaaaatataaatggaacattgctctttt 55255366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 363 - 232
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  363 tgaggttcatcatgtatacggtagtgattttcacatttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattg 264  T
Q  120 ttcttttnnnnnnnntacatttttattttatt 151  Q
    |||||||        |||||||||||||||||    
T  263 ttcttttaataaaaatacatttttattttatt 232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 45758503 - 45758685
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||   || |||||| ||| |||| |||||||||||||||| ||||||||||||||||    
T  45758503 tgaggttcctcatgtatacggtagtgattttcacctttggatgtataacatatatacaacaccttgcatttatcttttaaaaaatttaaatagaacattg 45758602  T
Q  120 ttctttt--nnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacg 200  Q
    |||||||          ||||||||||||||||||||  ||||||||||||||||||  ||||| || |||||||||||||||    
T  45758603 ttcttttaaaaaaaatatacatttttattttatttcggacctcttttcacttacagagccgagcctctggattcgtaggaacg 45758685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 43235874 - 43235690
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttt--taaaaattttaaatagaacat 117  Q
    |||||||||||||||||||| || ||||||||||||||||||||||  || ||||||||||||||||||||||||||   ||||| ||||||||||||||    
T  43235874 tgaggttcctcatgtatacgatagtgattttcacctttgggtgtacatcatatatacgacatcttgtatttatctttaaaaaaaaatttaaatagaacat 43235775  T
Q  118 tgttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgac 202  Q
    | ||||||         ||||||||||||||||| |   |||||||||||||||| | |||||  | ||||||||||||||||||    
T  43235774 ttttctttagaaaaaaatacatttttattttattacaggcctcttttcacttacaaagtcgagtattcggattcgtaggaacgac 43235690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 39134827 - 39134638
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatc-ttttaaaaattttaaatagaacatt 118  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||  ||| ||||||  || |||||||||||| ||||||||| |||||||||||||||    
T  39134827 tgaggttcctcatgtatacagtagtgattatcacctttgggtgtattgcatatatacagcaccttgtatttatctttttaaaaaatttaaatagaacatt 39134728  T
Q  119 gttctttt--nnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
    ||||||||          ||| ||||||||||||| |||  |||||||||||||| ||  ||||| |||||||||||||||||| |||||    
T  39134727 gttcttttaaaaaaaaaatacgtttttattttattacgagtctcttttcacttacggagccgagcctccggattcgtaggaacggccctg 39134638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 27559649 - 27559745
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| | ||||||||||||||    
T  27559649 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattg 27559745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 5316692 - 5316795
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  5316692 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 5316791  T
Q  123 tttt 126  Q
    ||||    
T  5316792 tttt 5316795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 23185439 - 23185542
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  23185439 ggttcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 23185538  T
Q  123 tttt 126  Q
    ||||    
T  23185539 tttt 23185542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 44655753 - 44655856
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | ||||| |||| ||||||||||||| |||||||||| ||||||||||||||||||||| | |||||||||||||| ||    
T  44655753 ggttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 44655852  T
Q  123 tttt 126  Q
    ||||    
T  44655853 tttt 44655856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 38547140 - 38547035
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||| | || |||||||||| |||||||||||| || ||||||| || ||||||||||||||||||||| ||||||||||||||||    
T  38547140 tgaggttcctcatgtatatgatagtgattttcacatttgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattg 38547041  T
Q  120 ttcttt 125  Q
     |||||    
T  38547040 atcttt 38547035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 5533321 - 5533501
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatctttt-aaaaattttaaatagaacatt 118  Q
    |||| |||||||||||||||||| |||||||||||||||  |||||  || ||||||| || ||||| |||||||||| ||||| ||||||||||| |||    
T  5533321 tgagtttcctcatgtatacggtagtgattttcacctttgattgtacatcatatatacggcaccttgtgtttatcttttaaaaaaatttaaatagaatatt 5533420  T
Q  119 gttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacg 200  Q
    ||||||||        ||||||||||||||||| ||   ||||||||||||||||| || ||| ||||||||||||| ||||    
T  5533421 gttctttt-aaaaaaatacatttttattttattacgggtctcttttcacttacagagtcaagcctccggattcgtagaaacg 5533501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 26803957 - 26804059
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||| ||||||||||||||| |||||||||||||   ||||| |||| |||||||||||||||||||||||||||||||| |||||||| | |||||    
T  26803957 tgaggtttctcatgtatacggtagtgattttcacctt---gtgtatcgcatatatacgacatcttgtatttatcttttaaaaaatttaaatatagcattg 26804053  T
Q  120 ttcttt 125  Q
    ||||||    
T  26804054 ttcttt 26804059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 9173124 - 9173026
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgtt 121  Q
    |||||||||||||||||||| | |||||||||||||| ||||||||| ||||||| || ||| ||||||||||||||||| | ||||||||||||||||    
T  9173124 ggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtt 9173026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 9181106 - 9181008
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgtt 121  Q
    |||||||||||||||||||| | |||||||||||||| ||||||||| ||||||| || ||| ||||||||||||||||| | ||||||||||||||||    
T  9181106 ggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtt 9181008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 50881440 - 50881545
Alignment:
Q  21 gaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgt 120  Q
    |||||||||||||||||| ||| | |||||||||| | | ||||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||     
T  50881440 gaggttcctcatgtatactgtagtcattttcacctctagatgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgc 50881539  T
Q  121 tctttt 126  Q
    ||||||    
T  50881540 tctttt 50881545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 6771801 - 6771897
Alignment:
Q  21 gaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacat 117  Q
    |||||||||| ||||||||||| | |||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | ||||||||||||    
T  6771801 gaggttcctcgtgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 6771897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 17168968 - 17169064
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||| |||| | |||||||||||||||||||||||| |||||| ||| ||| ||||||||||||||||| | ||||||||||||||    
T  17168968 ggttcctcatgtatatggtagtcattttcacctttgggtgtaccgcatatatacaacaccttatatttatcttttaaaaaatataaatagaacattg 17169064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 5027561 - 5027664
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||| |||| |||| | |||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  5027561 ggttcctcatctatatggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 5027660  T
Q  123 tttt 126  Q
    ||||    
T  5027661 tttt 5027664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 14146312 - 14146415
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | ||||||| || ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||| | ||    
T  14146312 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctc 14146411  T
Q  123 tttt 126  Q
    ||||    
T  14146412 tttt 14146415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 4971719 - 4971617
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||| | ||||||||||||| |||||||  | ||||||||||||||||||||| | |||||||||||||| ||    
T  4971719 ggttcctcatgtatacggtagtcattttcacttatgggtgtaccgcatatatacggtaccttgtatttatcttttaaaaaatataaatagaacattgctc 4971620  T
Q  123 ttt 125  Q
    |||    
T  4971619 ttt 4971617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 38853539 - 38853637
Alignment:
Q  28 ctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    ||||||||||||||| |||||||||||||||| | |||  || |||||||||| |||||||||||| |||||||| ||||||||||||| |||||||||    
T  38853539 ctcatgtatacggtagtgattttcacctttggatatacaacatatatacgacaccttgtatttatcatttaaaaaatttaaatagaacactgttctttt 38853637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 1366979 - 1366878
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||| ||||||||||| | ||||||| |||||||||||||||| ||||||| || ||| ||||||||||||||||| | |||||||||||||| ||    
T  1366979 ggttcctcgtgtatacggtagtcattttcatctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 1366880  T
Q  123 tt 124  Q
    ||    
T  1366879 tt 1366878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 6221687 - 6221791
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||| |||||| ||||||||||||| ||| | ||||||||  ||||||| ||  |||||||||||||||||||| ||||||||||||||||    
T  6221687 tgaggttcctcatatatacgataatgattttcacattttgatgtaccgcttatatacggcacattgtatttatcttttaaaaa-tttaaatagaacattg 6221785  T
Q  120 ttcttt 125  Q
    ||||||    
T  6221786 ttcttt 6221791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 40501893 - 40501796
Alignment:
Q  21 gaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    ||||||| |||||||||||||| | ||||| |||||||||||||||||| |||||||||| ||| ||||||||||||||||| | |||||||| ||||    
T  40501893 gaggttcttcatgtatacggtagtcatttttacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagatcatt 40501796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 16140069 - 16140161
Alignment:
Q  25 ttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacat 117  Q
    |||||||||||||||||| | |||||||||| | ||||||||||| |||||| ||| ||||||||||||||||||||| | ||||||||||||    
T  16140069 ttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacaacaccttgtatttatcttttaaaaaatataaatagaacat 16140161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 50146307 - 50146411
Alignment:
Q  22 aggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgtt 121  Q
    |||||||||||||||| |||||||||||| |||||||||| || | || ||| ||| || |||| |||||||||| ||||| ||||||||||||||||||    
T  50146307 aggttcctcatgtatagggtaatgatttttacctttgggtctatcacatatacacggcaccttgcatttatctttcaaaaagtttaaatagaacattgtt 50146406  T
Q  122 ctttt 126  Q
    |||||    
T  50146407 ctttt 50146411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 19955729 - 19955825
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||| ||||||||| | |||||||||||||||||||||||| |||||||  | ||| ||||||||||||||||| | |||||||| |||||    
T  19955729 ggttcctcatatatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatttatcttttaaaaaatataaatagatcattg 19955825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 33170770 - 33170874
Alignment:
Q  22 aggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgtt 121  Q
    ||||| ||||||||||||||| ||||||||||| || ||||||||||| |||||| |||  |||||||||  ||||||||| |||||||| |||||||||    
T  33170770 aggtttctcatgtatacggtagtgattttcaccatttggtgtaccgcatatatacaacacattgtatttacgttttaaaaaatttaaatataacattgtt 33170869  T
Q  122 ctttt 126  Q
     ||||    
T  33170870 ttttt 33170874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 3406430 - 3406533
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | ||||||||||  | |||||| ||| ||||||| || ||||||||||||||||||||| | |||||||||||| | ||    
T  3406430 ggttcctcatgtatacggtagtcattttcacctccgagtgtactgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctc 3406529  T
Q  123 tttt 126  Q
    ||||    
T  3406530 tttt 3406533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 3440390 - 3440287
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | ||||||||||  | |||||| ||| ||||||| || ||||||||||||||||||||| | |||||||||||| | ||    
T  3440390 ggttcctcatgtatacggtagtcattttcacctccgagtgtactgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctc 3440291  T
Q  123 tttt 126  Q
    ||||    
T  3440290 tttt 3440287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 6889634 - 6889726
Alignment:
Q  34 tatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    ||||||| ||| |||||||||| ||| ||||||||| |||||||| |  |||||||||||||||||||| | |||||||||||||| ||||||    
T  6889634 tatacggcaatcattttcacctctggatgtaccgcatatatacgatactttgtatttatcttttaaaaaatataaatagaacattgctctttt 6889726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 6891480 - 6891572
Alignment:
Q  34 tatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    ||||||| ||| |||||||||| ||| ||||||||| |||||||| |  |||||||||||||||||||| | |||||||||||||| ||||||    
T  6891480 tatacggcaatcattttcacctctggatgtaccgcatatatacgatactttgtatttatcttttaaaaaatataaatagaacattgctctttt 6891572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 41697238 - 41697135
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||| | ||| ||||| ||| |||||||| |  |||||||||||||||||||| | |||||||||||| | ||    
T  41697238 ggttcctcatgtatacggtagtcattttcacttctggatgtactgcatatatacgatactttgtatttatcttttaaaaaatataaatagaacatcgctc 41697139  T
Q  123 tttt 126  Q
    ||||    
T  41697138 tttt 41697135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 51607540 - 51607445
Alignment:
Q  24 gttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatac-gacatcttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    ||||||||||||||||||| | |||||||| ||||||||||||||| |||||| | || ||| ||||||||||||||||| | |||||| ||||||    
T  51607540 gttcctcatgtatacggtagtcattttcacgtttgggtgtaccgcatatatacggccaccttatatttatcttttaaaaaatataaataaaacatt 51607445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 21741029 - 21740935
Alignment:
Q  32 tgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    |||||| |||| | |||||||||| |||||||| |||| ||||||| || ||||||||||||||||||||| |  ||||||||||||| ||||||    
T  21741029 tgtatatggtagtcattttcacctctgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaaatacaaatagaacattgctctttt 21740935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 22865538 - 22865459
Alignment:
Q  46 attttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    |||||||||||||||||||||| | |||||   |||||||||||||||||||||||| | |||||||||||||| ||||||    
T  22865538 attttcacctttgggtgtaccg-atatatagagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 22865459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 10926058 - 10925951
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaat-tttaaatagaacatt 118  Q
    ||||| ||||||||||||||||| ||||||||| |||||| || | | || ||||||| ||  |||||||||| ||||||||||  |||||||||| |||    
T  10926058 tgaggatcctcatgtatacggtagtgattttcatctttggatgcatctcatatatacggcacattgtatttattttttaaaaatacttaaatagaatatt 10925959  T
Q  119 gttctttt 126  Q
    ||||||||    
T  10925958 gttctttt 10925951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 35392295 - 35392384
Alignment:
Q  36 tacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    ||||||| |||||||||||||||| | ||||||| ||||||| || ||||||||||||  ||||||| |||||||| |||||| |||||||    
T  35392295 tacggtagtgattttcacctttggatataccgcatatatacggcaccttgtatttatc-cttaaaaaatttaaataaaacattattctttt 35392384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 44895664 - 44895761
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||||| |||||||||||||||||||||      |  || || ||| ||||||||||||||||| | |||||||| |||||||     
T  44895664 ggttcctcatgtatacggtaatcattttcacctttgggtgtacc------acccgccaccttatatttatcttttaaaaaatataaatagatcattgttt 44895757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 13913583 - 13913485
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatata--cgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||| ||||||||||||||| | |||||||| ||| ||||||||||| |||||  || || ||| ||||||||||||||||| | |||||||| |||||    
T  13913583 ggtttctcatgtatacggtagtcattttcacttttaggtgtaccgcatatatacccggcaacttatatttatcttttaaaaaatataaatagatcattg 13913485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 17322664 - 17322621
Alignment:
Q  83 ttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    |||||||||||||| ||||| | |||||||||||||||||||||    
T  17322664 ttgtatttatctttaaaaaaatataaatagaacattgttctttt 17322621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 27906771 - 27906727
Alignment:
Q  82 cttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    ||||||||||||||||||||| | ||||| |||||||| ||||||    
T  27906771 cttgtatttatcttttaaaaaatataaatggaacattgctctttt 27906727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 106539 - 106642
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| | |||||||||||||||||    
T  106539 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgttc 106638  T
Q  123 tttt 126  Q
    ||||    
T  106639 tttt 106642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 230960 - 230780
Alignment:
Q  24 gttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttct 123  Q
    |||||||||||||| |||| |||||||||||||||||| || |||| |||||| ||| |||  ||||||||||||| || ||||||||||||||||||||    
T  230960 gttcctcatgtataaggtagtgattttcacctttgggtatatcgcatatatacaacaccttaaatttatcttttaacaaatttaaatagaacattgttct 230861  T
Q  124 tttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
    |||        ||||||||  ||||||| ||  ||||||||| ||||||||  |||||||||||||||||||||||| |||||    
T  230860 tttaaaaaatatacatttt--ttttattacgggcctcttttcccttacagatccgagcttccggattcgtaggaacggccctg 230780  T

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Target: scaffold0182 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 24098 - 23993
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||| ||||| ||| ||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  24098 tgagattccttatgcatacggtaatgattttcacttttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaatattg 23999  T
Q  120 ttcttt 125  Q
    ||||||    
T  23998 ttcttt 23993  T

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Target: scaffold0097 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 38923 - 39108
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||| ||||||||| |||||||||| |||| ||||| |||| |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  38923 tgaggttcctcatatatacggtagtgattttcacatttgtgtgtatcgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattg 39022  T
Q  120 ttctt---ttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgac 202  Q
    || ||              || ||||||||||||| ||  |||||||| |||||||||||||||| ||| ||||||||||||||||    
T  39023 tttttaaaaaaaaaaaaaaacgtttttattttattacggacctctttttacttacagaatcgagcctccagattcgtaggaacgac 39108  T

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Target: scaffold1320 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 1352 - 1534
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||||| || |||||||||| ||||||||||  ||| ||||||  || ||| |||||||||||||||||||||||||||||||||     
T  1352 tgaggttcctcatgtatacgatagtgattttcacatttgggtgtatagcatatatacagcaccttatatttatcttttaaaaattttaaatagaacatta 1451  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgac 202  Q
    |||||||        ||| ||||||||||||| ||  | ||||||||||||||||   |||| | | ||||||||||||||||    
T  1452 ttcttttaaaaaaaatacgtttttattttattacggacttcttttcacttacagagcagagccttcagattcgtaggaacgac 1534  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 2477689 - 2477510
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||| |||| ||||| | || ||||||||||||||||||||| ||||||| ||||||||    
T  2477689 tgaggttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtcaccttgtatttatcttttaaaaaatttaaattgaacattg 2477590  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacg 200  Q
    ||| |||        |||| | |||||||||| ||   |||||||||||||||||| ||||| ||| |||| |||||||||    
T  2477589 ttcgttt-aaaaaaatacaatcttattttattacgggtctcttttcacttacagaaccgagcctccagatttgtaggaacg 2477510  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 13727501 - 13727398
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  13727501 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 13727402  T
Q  123 tttt 126  Q
    ||||    
T  13727401 tttt 13727398  T

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Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 20711822 - 20711719
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||| | |||||||||||||| ||    
T  20711822 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 20711723  T
Q  123 tttt 126  Q
    ||||    
T  20711722 tttt 20711719  T

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Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 21479498 - 21479601
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  21479498 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 21479597  T
Q  123 tttt 126  Q
    ||||    
T  21479598 tttt 21479601  T

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Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 27788790 - 27788687
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||| | ||||||||| |||| ||    
T  27788790 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaaaattgctc 27788691  T
Q  123 tttt 126  Q
    ||||    
T  27788690 tttt 27788687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 33774121 - 33774216
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    |||||||||||||||||||| | |||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||    
T  33774121 ggttcctcatgtatacggtagtcattttcacatttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 33774216  T

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Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 21280550 - 21280652
Alignment:
Q  24 gttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttct 123  Q
    ||||||||||||||||||| | ||||| |||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| |||    
T  21280550 gttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 21280649  T
Q  124 ttt 126  Q
    |||    
T  21280650 ttt 21280652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 28075787 - 28075883
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||||| | ||||||||||||||||||| |||| ||||||| || ||| ||||||||||||||||| | ||||||||||||||    
T  28075787 ggttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattg 28075883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 19737794 - 19737691
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| | ||||||||||| ||||||| || ||||||||||||||| ||||| | |||||||||||||| ||    
T  19737794 ggttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggcaccttgtatttatctttaaaaaaatataaatagaacattgctc 19737695  T
Q  123 tttt 126  Q
    ||||    
T  19737694 tttt 19737691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 20611791 - 20611975
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||||||||||||||| |||||||||||||||| |||  || | |||||||||| |||||||||||| |||||||| ||||| ||||||||      
T  20611791 tgaggttcctcatgtatacggtagtgattttcacctttggatgtgtcgtatatatacgacaccttgtatttatcgtttaaaaaatttaagtagaacat-- 20611888  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
    || | ||         || |||||||||| ||  |  ||||||||||||||||||  ||||| |||| |||||||||||||||||||    
T  20611889 ttatcttgaaaaaaaaacgtttttatttttttatgggcctcttttcacttacagagccgagcctccgaattcgtaggaacgaccctg 20611975  T

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Target: chr6; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 1155947 - 1155849
Alignment:
Q  27 cctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttt 125  Q
    |||||||||||||||| | |||||||||| ||| ||||||||| ||||| |||| ||||||||||||||||||||| | |||||||||||||| |||||    
T  1155947 cctcatgtatacggtagtcattttcacctctggatgtaccgcatatatatgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 1155849  T

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Target: chr6; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 6159439 - 6159541
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||| || ||||||||| |||||| ||||||||  ||||||||| ||||||||||  |||||||||||||||||||| | ||||||||||||||    
T  6159439 tgaggttccttatatatacggtagtgatttccacctttgaatgtaccgcatatatacgacacattgtatttatcttttaaaaaatataaatagaacattg 6159538  T
Q  120 ttc 122  Q
    |||    
T  6159539 ttc 6159541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 21183780 - 21183686
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaa 114  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||| || |||||||  |  |||||||||||||||||||| |||||||||||    
T  21183780 tgaggttcctcatgtatacggtagtgattttcaactttgggtgtaccacatatatacgctactttgtatttatcttttaaaaaatttaaatagaa 21183686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 34397859 - 34397964
Alignment:
Q  21 gaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgt 120  Q
    |||||||||||||| |||| || | ||||| |||||| ||||||||||| ||||||| || ||||||||||||||||||||| | ||||||||||||||     
T  34397859 gaggttcctcatgtttacgatagtcatttttacctttaggtgtaccgcatatatacgtcaccttgtatttatcttttaaaaaatataaatagaacattgc 34397958  T
Q  121 tctttt 126  Q
    ||||||    
T  34397959 tctttt 34397964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 17353958 - 17354054
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||| ||||||||||| || | |||||||| ||||||||||||||| |||||||||| ||| ||||||||||||||||| | ||||||||||||||    
T  17353958 ggttcatcatgtatacgatagtcattttcacatttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattg 17354054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 24711101 - 24711007
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacat 117  Q
    |||||||||||||||||||| | |||||||||| || ||||||| || ||||||| || ||||||||||||||||||||| | ||||||||||||    
T  24711101 ggttcctcatgtatacggtagtcattttcacctctgagtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 24711007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 30832626 - 30832532
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacat 117  Q
    ||||||||||| |||||||| | ||||||| || |||||||||| || ||||||| |||||||||||||| ||||||||| | ||||||||||||    
T  30832626 ggttcctcatgcatacggtagtcattttcatctctgggtgtaccacatatatacggcatcttgtatttattttttaaaaaatgtaaatagaacat 30832532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 30121787 - 30121868
Alignment:
Q  44 tgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttt 125  Q
    |||||||||||||||| |||| |||| ||||| |||| ||||||||||| ||||||||| |||||||| |||||||||||||    
T  30121787 tgattttcacctttggatgtatcgcatatatatgacaccttgtatttattttttaaaaaatttaaataaaacattgttcttt 30121868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 27314258 - 27314177
Alignment:
Q  46 attttcacctttgggtgtaccgcacatatacgacatcttgtatttatc-ttttaaaaattttaaatagaacattgttctttt 126  Q
    |||||||||| || |||||||||| ||||||| || |||||||||||| ||||||||| | |||||||||||||| ||||||    
T  27314258 attttcacctctgagtgtaccgcatatatacggcaccttgtatttatctttttaaaaaatataaatagaacattgctctttt 27314177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 4036953 - 4037037
Alignment:
Q  24 gttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaa 108  Q
    ||||||||| ||||||||| |||| || |||||||||||||||  | ||||||| || ||||||||||||| |||||||| ||||    
T  4036953 gttcctcatatatacggtagtgatctttacctttgggtgtaccatatatatacggcaccttgtatttatctcttaaaaatattaa 4037037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 27994775 - 27994820
Alignment:
Q  25 ttcctcatgtatacggtaatgattttcacctttgggtgtaccgcac 70  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||    
T  27994775 ttcctcatgtatacggtagtgattttcacctttgagtgtaccgcac 27994820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 235328 - 235230
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatata--cgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||| ||||||||||||||| | ||||||| |||||||||||| | | |||||  || || ||| ||||||||||||||||| | |||||||| |||||    
T  235328 ggtttctcatgtatacggtagtcattttcatctttgggtgtacggtatatatacccggcaccttatatttatcttttaaaaaatataaatagatcattg 235230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 27994875 - 27994936
Alignment:
Q  139 tttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacg 200  Q
    ||||||||||||| ||| | | ||||| ||||||||  ||||||||||||||||||||||||    
T  27994875 tttttattttattacgagcttattttcgcttacagagccgagcttccggattcgtaggaacg 27994936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 3953998 - 3953895
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||  | |||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||||||    
T  3953998 ggttcctcatgtatacggttttcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgttc 3953899  T
Q  123 tttt 126  Q
    ||||    
T  3953898 tttt 3953895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 8073440 - 8073345
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    |||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| | |||||||||||||    
T  8073440 ggttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 8073345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 21582775 - 21582878
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||| ||||||||||    
T  21582775 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaataaaacattgttc 21582874  T
Q  123 tttt 126  Q
    ||||    
T  21582875 tttt 21582878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 54619305 - 54619202
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||    
T  54619305 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 54619206  T
Q  123 tttt 126  Q
    ||||    
T  54619205 tttt 54619202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 49393099 - 49393269
Alignment:
Q  28 ctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttttn 127  Q
    ||||||||||||||| | ||||| ||||||||||||||  || |||||||||  ||||||||||||||||||||| |||||| |||||||||||||||      
T  49393099 ctcatgtatacggtagtaatttttacctttgggtgtaca-catatatacgacgccttgtatttatcttttaaaaaatttaaagagaacattgttctttaa 49393197  T
Q  128 nnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacg 200  Q
           ||||||||||||||||| |||  || |||||||||||| |  ||||| ||||||||||||||||||    
T  49393198 aaaaaaatacatttttattttattacgagtcttttttcacttaca-agccgagcctccggattcgtaggaacg 49393269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 34290738 - 34290635
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||| ||||||||| | |||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||| | ||||||||||||||||     
T  34290738 ggttcctcatatatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgttt 34290639  T
Q  123 tttt 126  Q
    ||||    
T  34290638 tttt 34290635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 54574932 - 54574826
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||| |||| ||||||| || ||||||||||||||| |||||||  | ||||||||||| |||| |||| ||||||||||||||||    
T  54574932 tgaggttcctcatgtatatggtagtgatttttacttttgggtgtaccgcatatatacggtaccttgtatttatattttgaaaaatttaaatagaacattg 54574833  T
Q  120 ttctttt 126  Q
    |||||||    
T  54574832 ttctttt 54574826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 25855423 - 25855601
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||| || ||||||||||| ||||||||| ||||||||| ||  || |||||||||| |||||| |||||||||||||| ||||||||||||||||    
T  25855423 tgaggttcttcgtgtatacggtagtgattttcaactttgggtgcactacatatatacgacaccttgta-ttatcttttaaaaaatttaaatagaacattg 25855521  T
Q  120 ttcttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaac 199  Q
    ||||||         ||||||||||||||||| ||  ||| |||||| ||||| || ||||| ||| ||| || ||||||    
T  25855522 ttctttaaaaaaacatacatttttattttattacgggccttttttcatttacataaccgagcctccagatgcgcaggaac 25855601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 44708481 - 44708576
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    |||||||||||||||||||| | |||||||||||||||||||||| | ||||||| || ||| ||||||||||||||||| | |||||||||||||    
T  44708481 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccggatatatacggcaccttatatttatcttttaaaaaatataaatagaacatt 44708576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 53506986 - 53506883
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||| ||||||||||||||| | |||||||||||||||||||||||| |||||||  | ||| ||||||||||||||||| | ||||||||||||||||     
T  53506986 ggtttctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatttatcttttaaaaaatataaatagaacattgttt 53506887  T
Q  123 tttt 126  Q
    ||||    
T  53506886 tttt 53506883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 8420327 - 8420433
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||| | ||||||| | |||||||||| |||||||||||  || ||||||| || ||||||||||||||||||||| |||||||||||||||     
T  8420327 tgaggttcctcgtatatacggcagtgattttcacatttgggtgtacaacatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacatta 8420426  T
Q  120 ttctttt 126  Q
    |||||||    
T  8420427 ttctttt 8420433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 37168372 - 37168474
Alignment:
Q  24 gttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttct 123  Q
    ||||||||||||||||||| | |||||||||||||||| |||| || ||||||| || ||| ||||||||||||||||| | |||||||||||||||| |    
T  37168372 gttcctcatgtatacggtagtcattttcacctttgggtataccacatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtttt 37168471  T
Q  124 ttt 126  Q
    |||    
T  37168472 ttt 37168474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 47467688 - 47467782
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacat 117  Q
    |||||||||||||||||||| | |||||||||| |||||||| |||| ||||||| || ||||||||||||||||||||| | ||||||||||||    
T  47467688 ggttcctcatgtatacggtagtcattttcacctctgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 47467782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 26279541 - 26279649
Alignment:
Q  20 tgaggttcctcatgtatacggt--aatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacat 117  Q
    ||||||||||||||||||  ||  | ||||||||| |||||||||||  ||| |||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  26279541 tgaggttcctcatgtataatgtgtagtgattttcatctttgggtgtattgcatatatacgacaccttctatttatcttttaaaaaatttaaatagaacat 26279640  T
Q  118 tgttctttt 126  Q
    |||||||||    
T  26279641 tgttctttt 26279649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 32319260 - 32319155
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    ||||||||||| | |||| | || | |||||||||||||||||||||||| |||||| |||  |||||||||||||||||||| |||||||||||||||     
T  32319260 tgaggttcctcgtatataagatagtaattttcacctttgggtgtaccgcatatatacaacactttgtatttatcttttaaaaaatttaaatagaacatta 32319161  T
Q  120 ttcttt 125  Q
    ||||||    
T  32319160 ttcttt 32319155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 38681193 - 38681092
Alignment:
Q  25 ttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctt 124  Q
    |||||||||||||||||| | |||||||||| ||| ||||||||| | ||||| || ||||||||||||||||||||| | |||||||||||||| ||||    
T  38681193 ttcctcatgtatacggtagtcattttcacctctggatgtaccgcatacatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 38681094  T
Q  125 tt 126  Q
    ||    
T  38681093 tt 38681092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 42098805 - 42098908
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||| || || ||||||| ||||||| || ||||||||||||||||||||| | |||||||||||| | ||    
T  42098805 ggttcctcatgtatacggtagtcattttcacctctgagtataccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctc 42098904  T
Q  123 tttt 126  Q
    ||||    
T  42098905 tttt 42098908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 43207339 - 43207237
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | |||||||||||||  ||||||||| ||||||| || ||| ||||||||||||||||| | |||||||||||||| ||    
T  43207339 ggttcctcatgtatacggtagtcattttcacctttga-tgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 43207241  T
Q  123 tttt 126  Q
    ||||    
T  43207240 tttt 43207237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 54407252 - 54407157
Alignment:
Q  31 atgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    |||||||||||| | |||||||||||||| ||||||||| ||||||| || ||| ||||||||||||||||| | |||||||||||||||| ||||    
T  54407252 atgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgttttttt 54407157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 789937 - 790042
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||| |||  ||||||| ||||||||||||||  || ||||| |||| |||||||||||  |||||||| ||||||||||| ||||    
T  789937 tgaggttcctcatgtatatggtggtgatttttacctttgggtgtacaacatatatatgacaccttgtatttattgtttaaaaaatttaaatagaagattg 790036  T
Q  120 ttcttt 125  Q
    ||||||    
T  790037 ttcttt 790042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 18372485 - 18372590
Alignment:
Q  25 ttcctcatgtatacggtaatgattttcacctttgggtgtaccgcac----atatacgacatcttgtatttatcttttaaaaattttaaatagaacattgt 120  Q
    |||||||||||||||||| | |||||||||| || ||||||||| |    |||||||||| ||||||||||||||||||||| | ||||||||||||||     
T  18372485 ttcctcatgtatacggtagtcattttcacctctgtgtgtaccgcgcgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgc 18372584  T
Q  121 tctttt 126  Q
    ||||||    
T  18372585 tctttt 18372590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 27078671 - 27078575
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||| ||||||||||||||| | |||||||||| ||||| ||||||| ||||||| ||  |||||||||||||||||||| | ||||||||||||||    
T  27078671 ggtttctcatgtatacggtagtcattttcacctctgggtataccgcatatatacggcactttgtatttatcttttaaaaaatataaatagaacattg 27078575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 27084468 - 27084372
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||| ||||||||||||||| | |||||||||| ||||| ||||||| ||||||| ||  |||||||||||||||||||| | ||||||||||||||    
T  27084468 ggtttctcatgtatacggtagtcattttcacctctgggtataccgcatatatacggcactttgtatttatcttttaaaaaatataaatagaacattg 27084372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 9878789 - 9878686
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    ||||||| ||||||||| || | |||||||||||||||||||||||| ||||||  || ||| ||||||||||||||||| | ||||||||| |||| ||    
T  9878789 ggttccttatgtatacgatagtcattttcacctttgggtgtaccgcatatatactgcaccttatatttatcttttaaaaaatataaatagaatattgctc 9878690  T
Q  123 tttt 126  Q
    ||||    
T  9878689 tttt 9878686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 36716103 - 36716024
Alignment:
Q  47 ttttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    ||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||||| ||||||    
T  36716103 ttttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 36716024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 53149416 - 53149313
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | ||||| | || || |||||||||| ||||||| || ||||||||||||||||||||| | |||||||||||| | ||    
T  53149416 ggttcctcatgtatacggtagtcatttttatctctgagtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctc 53149317  T
Q  123 tttt 126  Q
    ||||    
T  53149316 tttt 53149313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 28689458 - 28689317
Alignment:
Q  28 ctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttcttttn 127  Q
    ||||||||||||| | |||||||||||||||| | || |||| ||||||| || ||||||||||||||||  ||| ||||||||||||||| || ||||     
T  28689458 ctcatgtatacggcagtgattttcacctttggatatatcgcatatatacggcaccttgtatttatctttttgaaaatttaaatagaacattcttttttta 28689359  T
Q  128 nnnnnnntacatttttattttatttcgatcctcttttcactt 169  Q
           ||  ||||||||||||| ||| |||||||||||||    
T  28689358 aaaaaaatatctttttattttattacgagcctcttttcactt 28689317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 42453435 - 42453511
Alignment:
Q  50 tcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    |||||||| |||||| |||| ||||| |||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  42453435 tcacctttaggtgtatcgcatatatatgacaccttgtatttatcttttaaaaaatttaaattgaacattgttctttt 42453511  T

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Target: chr3; HSP #29
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 50939335 - 50939239
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||||||| | ||||| |||||||||||||||  | ||||||| || ||| ||||||||||||||||| | |||||||| |||||    
T  50939335 ggttcctcatgtatacggtagtcatttttacctttgggtgtaccatatatatacggcaccttatatttatcttttaaaaaatataaatagatcattg 50939239  T

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Target: chr3; HSP #30
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 52374656 - 52374763
Alignment:
Q  19 atgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    ||||||||| |||||||||||||| |||||||| ||||| | |||| ||||  |||||||||  |||||||||| |   ||||| |||||||||||||||    
T  52374656 atgaggttcttcatgtatacggtagtgattttctcctttagatgtatcgcatctatacgacacattgtatttatttaaaaaaaaatttaaatagaacatt 52374755  T
Q  119 gttctttt 126  Q
    ||||||||    
T  52374756 gttctttt 52374763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 36605973 - 36606065
Alignment:
Q  27 cctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatc-ttttaaaaattttaaatagaacattg 119  Q
    |||||||||||||||| | ||||||| || ||||||||||||| ||||||| || |||||||||||| ||||||||| | ||||||||||||||    
T  36605973 cctcatgtatacggtagt-attttcatctctgggtgtaccgcatatatacggcaccttgtatttatctttttaaaaaatataaatagaacattg 36606065  T

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Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 23641382 - 23641242
Alignment:
Q  61 tgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt-nnnnnnnntacatttttattttatttcgatcct 159  Q
    ||||||||| ||||||||||  |||||||||||||||||||| | |||||||||  ||||||||||         ||| ||||||||||||  ||   ||    
T  23641382 tgtaccgcatatatacgacacattgtatttatcttttaaaaaatataaatagaatgttgttcttttaaaaaaaaatacgtttttattttatcacgggtct 23641283  T
Q  160 cttttcacttacagaatcgagcttccggattcgtaggaacg 200  Q
    |||||||| ||||||| ||||| ||| ||||||||||||||    
T  23641282 cttttcacctacagaaccgagcctccagattcgtaggaacg 23641242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 50258690 - 50258622
Alignment:
Q  58 gggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttctttt 126  Q
    |||||||||||| |||||||||| ||||||||||| ||||||||| | |||||||||||| | ||||||    
T  50258690 gggtgtaccgcatatatacgacaccttgtatttattttttaaaaaatataaatagaacatcgctctttt 50258622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 29620490 - 29620423
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtattt 90  Q
    |||||||||||||||||||| | |||||||||| ||| | ||||||| ||||||| || |||||||||    
T  29620490 ggttcctcatgtatacggtagtcattttcacctctggatataccgcatatatacggcaccttgtattt 29620423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 48157143 - 48157188
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgc 68  Q
    |||||||||||||||| ||| | |||||||||||||||||||||||    
T  48157143 ggttcctcatgtatacagtagtcattttcacctttgggtgtaccgc 48157188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 36179544 - 36179476
Alignment:
Q  138 atttttattttatttcgatcctcttttcacttacagaatcgagcttccggattcgtaggaacgaccctg 206  Q
    |||||||||||||| ||  ||||||||||||||  | | | ||| |||||||||||||||||| |||||    
T  36179544 atttttattttattacgggcctcttttcacttatgggaccaagcctccggattcgtaggaacggccctg 36179476  T

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Target: scaffold0018 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 173615 - 173515
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattg 119  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||| |||| |||||||  | ||||||||||||||||||||| ||||||||||||||||    
T  173615 tgaggttcctcacgtatacggtagtgatttttacctttgggtgtatcgcatatatacggtaccttgtatttatcttttaaaaaatttaaatagaacattg 173516  T
Q  120 t 120  Q
    |    
T  173515 t 173515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 1344 - 1447
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaattttaaatagaacattgttc 122  Q
    |||||||||||||||||||| | ||||||| || ||||||||||||| ||||||| || ||||||||||||||||||||| | ||||||||||| || ||    
T  1344 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcagcttgtatttatcttttaaaaaatataaatagaacagtgctc 1443  T
Q  123 tttt 126  Q
    ||||    
T  1444 tttt 1447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 40083 - 40240
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatctttt--aaaaattttaaatagaacat 117  Q
    ||||||| |||||||||||| |  ||||||||||||| ||||||||  || | ||||| || ||||||||||||||||  |||||  |||||||||||||    
T  40083 tgaggttgctcatgtatacgattgtgattttcaccttagggtgtacaacataaatacggcaccttgtatttatcttttaaaaaaaaattaaatagaacat 40182  T
Q  118 tgttc-ttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacaga 174  Q
    ||||| ||||        ||||||||||||||||| ||| ||||||||||||||||||    
T  40183 tgttctttttaaaaaaaatacatttttattttattacgaacctcttttcacttacaga 40240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 138143 - 138300
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatctttt--aaaaattttaaatagaacat 117  Q
    ||||||| |||||||||||| |  ||||||||||||| ||||||||  || | ||||| || ||||||||||||||||  |||||  |||||||||||||    
T  138143 tgaggttgctcatgtatacgattgtgattttcaccttagggtgtacaacataaatacggcaccttgtatttatcttttaaaaaaaaattaaatagaacat 138242  T
Q  118 tgttc-ttttnnnnnnnntacatttttattttatttcgatcctcttttcacttacaga 174  Q
    ||||| ||||        ||||||||||||||||| ||| ||||||||||||||||||    
T  138243 tgttctttttaaaaaaaatacatttttattttattacgaacctcttttcacttacaga 138300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 16025 - 16095
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtattt 90  Q
    ||||||| ||||||||||||||| ||||||||| |||||| ||||||||| | ||||||||||||||||||    
T  16025 tgaggtttctcatgtatacggtagtgattttcatctttggatgtaccgcatacatacgacatcttgtattt 16095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 16125 - 16161
Alignment:
Q  82 cttgtatttatcttttaaaaattttaaatagaacatt 118  Q
    ||||||||||||||||||||| |||||||||||||||    
T  16125 cttgtatttatcttttaaaaaatttaaatagaacatt 16161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 351439 - 351339
Alignment:
Q  20 tgaggttcctcatgtatacggtaatgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaa-aaattttaaatagaacatt 118  Q
    |||||| |||| ||||| | |||  |||||||||||||||||||||  || |||||||||| ||||||||||||||||||    ||||||||||||||||    
T  351439 tgaggtacctcgtgtattcagtagcgattttcacctttgggtgtacaacatatatacgacaccttgtatttatcttttaattttttttaaatagaacatt 351340  T
Q  119 g 119  Q
    |    
T  351339 g 351339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 181920 - 181966
Alignment:
Q  23 ggttcctcatgtatacggtaatgattttcacctttgggtgtaccgca 69  Q
    |||||||||||||||||||| | |||||||||| ||| |||||||||    
T  181920 ggttcctcatgtatacggtagtcattttcacctctggatgtaccgca 181966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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