View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_71 (Length: 251)
Name: NF12942_low_71
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_71 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 34298984 - 34298752
Alignment:
| Q |
1 |
tgtctcctctctcccttttaaggatgctgtgaaaacttcaatcctttctaaagattggaagaaggtatgcaaattaacaagaaacatagagttcaatgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
34298984 |
tgtctcctctctcccttttaaggatgctgtgaaaacttcaaccctctctaaagattgggagaatgtatgcaaattaacaagaaacatagagttcaatgaa |
34298885 |
T |
|
| Q |
101 |
ctcttctttgttaaatttgatcaacctcatgaaattgttcatgctcaaagaatgacatttttggatttcatgaaaaaatggatagaaaatcatggagaaa |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34298884 |
ctcttctttattaaatttgatcaacctcatgaaattgttcattctcaaagaatggcatttttggatttcatgaaaaaagggatagaaaatcatggagaaa |
34298785 |
T |
|
| Q |
201 |
atgccattgacaaattctctttaaaaatgtcag |
233 |
Q |
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| T |
34298784 |
atgccattgacaaattctctttaacaatgtcag |
34298752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 34285609 - 34285469
Alignment:
| Q |
1 |
tgtctcctctctcccttttaaggatgctgtgaaaacttcaatcctttctaaagattggaagaaggtatgcaaattaacaagaaacatagagttcaatgaa |
100 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34285609 |
tgtctcctctctcccttttaaggatgctgcgagaacttcaatcctttctaaagattggaagaaggtatgcaaattaacaagaaacatagagttcaatgaa |
34285510 |
T |
|
| Q |
101 |
ctcttctttgttaaatttgatcaacctcatgaaattgttca |
141 |
Q |
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| T |
34285509 |
ctcttctttattaaatttgatcaaactcatgaaattgttca |
34285469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 34302438 - 34302330
Alignment:
| Q |
1 |
tgtctcctctctcccttttaaggatgctgtgaaaacttcaatcctttctaaagattggaagaaggtatgcaaattaacaagaaacatagagttcaatgaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
34302438 |
tgtctcctctctcccttttaaggatgctgtgaaaacttcaatcctctctaaagattgggagaacgtatgcaaattaacaagaaacatagagttcaatgaa |
34302339 |
T |
|
| Q |
101 |
ctcttcttt |
109 |
Q |
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||||||||| |
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| T |
34302338 |
ctcttcttt |
34302330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 28249456 - 28249266
Alignment:
| Q |
34 |
aacttcaatcctttctaaagattggaagaaggtatgcaaattaacaagaaacatagagttcaatgaactcttctttgttaaatttgatcaacctcatgaa |
133 |
Q |
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|||||| || || |||||||||||| |||||||||||||| ||||| ||| |||||||||||||||||||||||||||||| ||| | || ||| |||| |
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| T |
28249456 |
aacttctattctctctaaagattgggtgaaggtatgcaaatcaacaacaaaaatagagttcaatgaactcttctttgttaaagttggttaatctcctgaa |
28249357 |
T |
|
| Q |
134 |
attgttcatgctcaaagaatgacatttttggatttcatgaaaaaatggatagaaaatcatggagaaaatgccattgacaaattctctttaa |
224 |
Q |
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|||||| |||||||||||| | |||||| | |||| || ||||||||| |||||||| |||||| ||| |||||||||||||||||||| |
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| T |
28249356 |
attgttgatgctcaaagaagggcattttcagctttcgcgagaaaatggattgaaaatcacggagaagatgtcattgacaaattctctttaa |
28249266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 28235166 - 28235032
Alignment:
| Q |
82 |
aaacatagagttcaatgaactcttctttgttaaatttgatcaacctcatgaaattgttcatgctcaaagaatgacatttttggatttcatgaaaaaatgg |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||| || | ||||||||||| |||||||| ||||||||||||| ||| |
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| T |
28235166 |
aaacatagagttcaatgaactcttctttgttaaatttgatcaatcttctgaaattattgacgctcaaagaataacattttttaatttcatgaaaaagtgg |
28235067 |
T |
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| Q |
182 |
atagaaaatcatggagaaaatgccattgacaaatt |
216 |
Q |
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|| || ||| || |||||||| |||||| ||||| |
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| T |
28235066 |
atccaagatcgtgcagaaaatgtcattgaaaaatt |
28235032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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