View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_72 (Length: 250)
Name: NF12942_low_72
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_72 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 27140046 - 27139806
Alignment:
| Q |
10 |
aagaaaataaacaataacatcaaaaccgagatagaaataaggtgggcatcacattannnnnnn-gcaatcacatcggtaggtaacactttaacaggacca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27140046 |
aagaaaataaacaataacatcaaaaccgagatagaaataaggtgtgcatcacattattttttttgcaatcacatcggtaggtaacactttaacaggacca |
27139947 |
T |
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| Q |
109 |
attactgcgatttgaaaaacccattcccaaacttcttnnnnnnngcttacaggtatgctacattcaaaccaagaagcagcatttggtccataaaagaaac |
208 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27139946 |
attactgcgatttgaaaaacccattcccaaacttcttaaaaaaagcttacaggtatgctacattcaaaccaagaagcagcatttggtccataaaagaaac |
27139847 |
T |
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| Q |
209 |
cnnnnnnncacataagagcattgatcaagtaataccttagaa |
250 |
Q |
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| T |
27139846 |
c-ttttttcacataagagcattgatcaagcaataccttagaa |
27139806 |
T |
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