View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_78 (Length: 241)
Name: NF12942_low_78
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 48808244 - 48808024
Alignment:
| Q |
10 |
cttgacacatgaatggacct-aagatgatgtagctagtgtcgaagaatccatagattgtacctttctgttagcaacaatcatgtaaaaagaagattgtaa |
108 |
Q |
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| T |
48808244 |
cttgacacatgaatggaccttaagatgatgtagctagtggcgaagaatccatagattgtacctttctgttagcaacaatcatgtaaaaagaagattgtaa |
48808145 |
T |
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| Q |
109 |
aattactcataactctaaaatgcaattagaacacgtactttg---nnnnnnntaaaagaatgacgatgtgacgtctttgacaattgacagtggtccccct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48808144 |
aattactcataactctaaaatgcaattagaacacgtactttgaaaaaaagaaaaaaagaatgacgatgtgacgtctttgacaattgacagtggtccccct |
48808045 |
T |
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| Q |
206 |
gaatgccactacacactatct |
226 |
Q |
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||||||||||||||||||||| |
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| T |
48808044 |
gaatgccactacacactatct |
48808024 |
T |
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