View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12942_low_84 (Length: 227)
Name: NF12942_low_84
Description: NF12942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12942_low_84 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 22 - 227
Target Start/End: Original strand, 31097226 - 31097431
Alignment:
| Q |
22 |
ttgtgtccatgatttagtgcttaaattataaacttctgttagtgaaagatccgccacaatggtatcagataaaccgagcttaacaactttgaagtcgttg |
121 |
Q |
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| T |
31097226 |
ttgtgtccatgatttagtgcttaaattataaacttctgttaatgaaagatccgccacaatggtatcagataaaccgagcttaacaactttgaagtcgttg |
31097325 |
T |
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| Q |
122 |
ttaacgacaccaaaaccatacaagcattcatcgatgtaacaggtacagagtgacggagctcgaggaatgaggtggacctcattagttccacacaatcaac |
221 |
Q |
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| T |
31097326 |
ttaacaacaccaaaaccatacaagcattcatcgatgtaacaggtacagagtgacggagctcgaggaatgaggtggacctcattagttccacacaatcaac |
31097425 |
T |
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| Q |
222 |
tgatca |
227 |
Q |
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|||||| |
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| T |
31097426 |
tgatca |
31097431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 31103876 - 31103980
Alignment:
| Q |
104 |
acaactttgaagtcgttgttaacgacaccaaaaccatacaagcattcatcgatgtaacaggtacagagtgacggagctcgaggaatgaggtggacctcat |
203 |
Q |
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| T |
31103876 |
acaactttgaagtcgtcgttaacagcaccaaaaccatacaaggattcatcagagtaatggttaccgagtgagggagcgcgaggaataagatggacctctt |
31103975 |
T |
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| Q |
204 |
tagtt |
208 |
Q |
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| T |
31103976 |
tagtt |
31103980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 31107124 - 31107020
Alignment:
| Q |
104 |
acaactttgaagtcgttgttaacgacaccaaaaccatacaagcattcatcgatgtaacaggtacagagtgacggagctcgaggaatgaggtggacctcat |
203 |
Q |
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| T |
31107124 |
acaactttgaagtcgccattaacagcaccaaaactatacaaggattcatcaatgtaatggctaccgagtgaaggagcacggggaataaagtggacctcat |
31107025 |
T |
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| Q |
204 |
tagtt |
208 |
Q |
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||||| |
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| T |
31107024 |
tagtt |
31107020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 38956377 - 38956483
Alignment:
| Q |
88 |
agataaaccgagcttaacaactttgaagtcgttgttaacgacaccaaaaccatacaagcattcatcgatgtaacaggtacagagtgacggagctcgagga |
187 |
Q |
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| T |
38956377 |
agataaactaagcctaacaactttgaagtcattattaacgactccaaaacaatacaatgattcatcaatgtaacaattaccgagtgacggagcaccagga |
38956476 |
T |
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| Q |
188 |
atgaggt |
194 |
Q |
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||||||| |
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| T |
38956477 |
atgaggt |
38956483 |
T |
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