View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_high_11 (Length: 572)
Name: NF12943_high_11
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 524; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 15 - 554
Target Start/End: Complemental strand, 12994299 - 12993760
Alignment:
| Q |
15 |
actggttggtccggtggcaggtatgcttttagtgcttctctttgcaatattgttgagtttctttgttttttcgcgctaaacatgatgttcttgtctgtgt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12994299 |
actggttggtccggtggcaggtatgcttttagtgcttctctttgcaatattgttgagtttctttgttttttcgcgctaaacatgatgttcttgtctatgt |
12994200 |
T |
|
| Q |
115 |
caaattaatgcagctatggtaccgggaatcgtatcaaactaagttatactagaaaaataattgatgctattcacaatggaagcctcctgggggcagaata |
214 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12994199 |
caaattaatccagctatggtaccgggaatcgtatcaaactaagttatactagaaaaataattgatgctattcacaatggaagcctcctgggggcagaata |
12994100 |
T |
|
| Q |
215 |
caagaagagtgagatttttggccttcagaccccaactgaagtggagggtgtcccttcagaaattctggatcctatcaatgcggtaagttatcctagaaca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
12994099 |
caagaagagtgagatttttggccttcagaccccaactgaagtggagggtgtcccttcagaaattctggatcctataaatgcggtaagttatcctaaaaca |
12994000 |
T |
|
| Q |
315 |
gttcgtttattcaccttgcgtggtaataaaacacttgtaatttagaaacgggatattaataattggtatttttgatggattgcagtggtcagacaaaaac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12993999 |
gttcgtttattcaccttgcgtggtaataaaacacttgtaatttagaaacgggatattaataattggtatttttgatggattgcagtggtcagacaaaaac |
12993900 |
T |
|
| Q |
415 |
gcctacaatgcgacattgttgaagctgggtggattgttcaagaagaattttgaaaccttcaccaactacaaaattggaaagggtgatgacaacctcacag |
514 |
Q |
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| T |
12993899 |
gcctacaatgcgacattgttgaagctgggtggattgttcaagaagaattttgaaaccttcaccaactacaaaattggaaagggtgatgacaacctcacag |
12993800 |
T |
|
| Q |
515 |
aagagattcttgcagctggtccaatcttttgaagtgaagc |
554 |
Q |
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| T |
12993799 |
aagagattcttgcagctggtccaatcttttgaagtgaagc |
12993760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 15 - 554
Target Start/End: Complemental strand, 13068948 - 13068409
Alignment:
| Q |
15 |
actggttggtccggtggcaggtatgcttttagtgcttctctttgcaatattgttgagtttctttgttttttcgcgctaaacatgatgttcttgtctgtgt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13068948 |
actggttggtccggtggcaggtatgcttttagtgcttctctttgcaatattgttgagtttctttgttttttcgcgctaaacatgatgttcttgtctatgt |
13068849 |
T |
|
| Q |
115 |
caaattaatgcagctatggtaccgggaatcgtatcaaactaagttatactagaaaaataattgatgctattcacaatggaagcctcctgggggcagaata |
214 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13068848 |
caaattaatccagctatggtaccgggaatcgtatcaaactaagttatactagaaaaataattgatgctattcacaatggaagcctcctgggggcagaata |
13068749 |
T |
|
| Q |
215 |
caagaagagtgagatttttggccttcagaccccaactgaagtggagggtgtcccttcagaaattctggatcctatcaatgcggtaagttatcctagaaca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
13068748 |
caagaagagtgagatttttggccttcagaccccaactgaagtggagggtgtcccttcagaaattctggatcctataaatgcggtaagttatcctaaaaca |
13068649 |
T |
|
| Q |
315 |
gttcgtttattcaccttgcgtggtaataaaacacttgtaatttagaaacgggatattaataattggtatttttgatggattgcagtggtcagacaaaaac |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13068648 |
gttcgtttattcaccttgcgtggtaataaaacacttctaatttagaaacgggatattaataattggtatttttgatggattccagtggtcagacaaaaac |
13068549 |
T |
|
| Q |
415 |
gcctacaatgcgacattgttgaagctgggtggattgttcaagaagaattttgaaaccttcaccaactacaaaattggaaagggtgatgacaacctcacag |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13068548 |
gcctacaatgcgacattgttgaagctgggtggattgttcaagaagaattttgaaaccttcaccaactacaaaattggaaagggtgatgacaacctcacag |
13068449 |
T |
|
| Q |
515 |
aagagattcttgcagctggtccaatcttttgaagtgaagc |
554 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
13068448 |
aagagattcttgcagctggtccaatcttttgaagtgaagc |
13068409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 393 - 546
Target Start/End: Complemental strand, 28135738 - 28135588
Alignment:
| Q |
393 |
attgcagtggtcagacaaaaacgcctacaatgcgacattgttgaagctgggtggattgttcaagaagaattttgaaaccttcaccaactacaaaattgga |
492 |
Q |
| |
|
|||||||||||||||||| ||||| ||| || |||| | |||||| ||| |||||| ||||||||||| |||||||||||||| ||||| | |||||| |
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| T |
28135738 |
attgcagtggtcagacaagaacgcatactttgagacactattgaagttggctggattattcaagaagaactttgaaaccttcactaactatacgattgga |
28135639 |
T |
|
| Q |
493 |
aagggtgatgacaacctcacagaagagattcttgcagctggtccaatcttttga |
546 |
Q |
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||||| |||| | |||||||| ||||||||||||||||||||||||||| |
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| T |
28135638 |
---ggtgacaacaaattgacagaagatattcttgcagctggtccaatcttttga |
28135588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 280
Target Start/End: Complemental strand, 28136129 - 28135972
Alignment:
| Q |
123 |
tgcagctatggtaccgggaatcgtatcaaactaagttatactagaaaaataattgatgctattcacaatggaagcctcctgggggcagaatacaagaaga |
222 |
Q |
| |
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||||||||||||| ||| ||||| || ||||| | ||||| |||||||| |||||||||||||| ||||||||| || | | |||||||||| |
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| T |
28136129 |
tgcagctatggtagcggaaatcgcattaaacttggctatacaagaaaaattattgatgctattcattcaggaagcctcttgaatgttcagtacaagaaga |
28136030 |
T |
|
| Q |
223 |
gtgagatttttggccttcagaccccaactgaagtggagggtgtcccttcagaaattct |
280 |
Q |
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||||||||| || ||| ||| ||| ||||||||||| || ||||| ||||||||||| |
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| T |
28136029 |
ctgagattttcgggcttgagatccctactgaagtggaaggagtcccctcagaaattct |
28135972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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