View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12943_high_12 (Length: 571)

Name: NF12943_high_12
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12943_high_12
NF12943_high_12
[»] chr1 (4 HSPs)
chr1 (13-553)||(4366812-4367337)
chr1 (26-181)||(17561085-17561241)
chr1 (35-84)||(39379409-39379458)
chr1 (254-298)||(39379601-39379645)
[»] chr7 (20 HSPs)
chr7 (35-188)||(29431340-29431496)
chr7 (26-188)||(29454436-29454601)
chr7 (243-349)||(29873918-29874024)
chr7 (25-181)||(29898953-29899109)
chr7 (51-110)||(29859101-29859160)
chr7 (32-188)||(29895044-29895197)
chr7 (125-189)||(29922425-29922489)
chr7 (254-349)||(29858859-29858954)
chr7 (254-299)||(29894951-29894996)
chr7 (25-73)||(29884953-29885001)
chr7 (254-313)||(29106273-29106332)
chr7 (254-299)||(29074552-29074597)
chr7 (254-313)||(29898833-29898892)
chr7 (410-464)||(29431731-29431785)
chr7 (47-84)||(15572249-15572286)
chr7 (38-82)||(19637571-19637615)
chr7 (44-84)||(22021065-22021105)
chr7 (137-181)||(22088208-22088252)
chr7 (30-94)||(29445984-29446048)
chr7 (254-286)||(29884761-29884793)
[»] chr4 (2 HSPs)
chr4 (34-82)||(3561305-3561353)
chr4 (254-304)||(11849206-11849256)
[»] chr2 (2 HSPs)
chr2 (39-81)||(18921079-18921121)
chr2 (39-79)||(18909152-18909192)


Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 13 - 553
Target Start/End: Original strand, 4366812 - 4367337
Alignment:
Q  13 aatattccccaaagtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4366812 aatattccccaaagtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctg 4366911  T
Q  113 ttgatttggatggtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaattgccatgatagctgaaagtttca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4366912 ttgatttggatggtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaattgccatgatagctgaaagtttca 4367011  T
Q  213 ggtggagagtttcgaaaatcttgaaaacgaccaaatatcgcagatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcgg 312  Q
    |               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367012 g---------------aatcttgaaaacgaccaaatatcgcagatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcgg 4367096  T
Q  313 tcacagaataatcactcaaacagatcaatccattgcatgtgccaaccatacgatagcaatctttgttgaccaaatgatagtaagggtcgatggaaaaggt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367097 tcacagaataatcactcaaacagatcaatccattgcatgtgccaaccatacgatagcaatctttgttgaccaaatgatagtaagggtcgatggaaaaggt 4367196  T
Q  413 gaatgacggattctcaattaaatggtgcatggagtaaggaacgacactgcaatccagcccaggtacatcgtcactgccatccgaggaatcgcctggtgtg 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367197 gaatgacggattctcaattaaatggtgcatggagtaaggaacgatgctgcaatccagcccaggtacatcgtcactgccatccgaggaatcgcctggtgtg 4367296  T
Q  513 agatctgtgatgtggtgcgagattagtgtgaagagcagatt 553  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4367297 agatctgtgatgtggtgcgagattagtgtgaagagcagatt 4367337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 17561085 - 17561241
Alignment:
Q  26 gtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacactt-agaatcctcacaatgcttctctgttgatttggatg 124  Q
    |||||||| |||||||||||  || ||||||| |||||||||||||||||||||||||| |||| | ||| |||||| |||| |||  ||||  |||||     
T  17561085 gtccaaatcaagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaaattctcacattgctactcctttgacatggatt 17561184  T
Q  125 gtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaa 181  Q
    |||||| ||  |||| ||||||||| | || || ||| | ||||||||||| |||||    
T  17561185 gtaacgtgaagccactaccttataaatgtcggtggaagtatcacaaccaaagttgaa 17561241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 39379409 - 39379458
Alignment:
Q  35 aagaggaacaataggaaaactttcaatatctctccaaacgttatcaccca 84  Q
    |||||||||||  || ||||||||||||| ||||||||| ||||||||||    
T  39379409 aagaggaacaaccgggaaactttcaatatttctccaaacattatcaccca 39379458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 39379601 - 39379645
Alignment:
Q  254 agatgttgtcctggttgctgggttccataaacgaaaccagtactc 298  Q
    ||||||| |||| || ||||||||||||||||| |||||||||||    
T  39379601 agatgttttcctagtggctgggttccataaacggaaccagtactc 39379645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 29431340 - 29431496
Alignment:
Q  35 aagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttga---tttggatggtaacgg 131  Q
    ||||||||||| ||| ||||||||||||||||||||||| ||||||| || ||||| |||  | ||| |||||||| ||| |   ||||||| |||||||    
T  29431340 aagaggaacaacagggaaactttcaatatctctccaaacattatcactcaaacttaaaattttgacattgcttctcagttcatcttttggattgtaacgg 29431439  T
Q  132 gacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaa 188  Q
    ||| |||||||||||||||| || |||| ||||||| ||||||| || || ||||||    
T  29431440 gacgccaccaccttataagtgtcggttgcattgtcaaaaccaaagttaaacttgaaa 29431496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 29454436 - 29454601
Alignment:
Q  26 gtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttct---ctgttgatttgga 122  Q
    |||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||  || |||||||||  | ||| |||||||    || || | ||||    
T  29454436 gtccaaatgaagaggagcaacagggaaactttcaatatctctccaaacattatcatgcaaacttagaattttgacattgcttctgcagtgatgttctgga 29454535  T
Q  123 tggtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaa 188  Q
    | |||||||||| ||||| | || || |||||||||||||||||| | ||||| ||||| ||||||    
T  29454536 tcgtaacgggacgccaccgctttctaggtatcagttgaattgtcatagccaaagttgaacttgaaa 29454601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 243 - 349
Target Start/End: Complemental strand, 29874024 - 29873918
Alignment:
Q  243 ccaaatatcgcagatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcggtcacagaataatcactcaaacagatcaatc 342  Q
    |||||||| | ||||||| ||||||| |||||||||||||||| || |||||||||| ||| ||||| ||| |  ||| ||||| |||||||||||||||    
T  29874024 ccaaatattggagatgttatcctggtggctgggttccataaacaaagccagtactctttatcttcataggtgaaggaacaatcagtcaaacagatcaatc 29873925  T
Q  343 cattgca 349  Q
    |||||||    
T  29873924 cattgca 29873918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 29899109 - 29898953
Alignment:
Q  25 agtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttgatttggatg 124  Q
    ||||| |||||||||||||||  || ||||||||||||||||||||||| |||||||| | ||| |||||  ||||| ||||||||  | ||  |||||     
T  29899109 agtccgaatgaagaggaacaactgggaaactttcaatatctctccaaacattatcaccaaaactgagaattttcacattgcttctcaatcgaactggatt 29899010  T
Q  125 gtaacgggacaccaccaccttataagtatcag-ttgaattgtcacaaccaaacttgaa 181  Q
    ||||||| |  |||||||||||||||| || | ||||||||||| ||||||| |||||    
T  29899009 gtaacggtatgccaccaccttataagt-tctgtttgaattgtcaaaaccaaatttgaa 29898953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 29859160 - 29859101
Alignment:
Q  51 aaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctc 110  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  29859160 aaactttcaatatctctccaaacgttatcacccaaacttagaattctcacattgcttctc 29859101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 29895197 - 29895044
Alignment:
Q  32 atgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttgatttggatggtaacgg 131  Q
    ||||||||| |||  ||| |||||||||||||||||||||| |||   ||||||| ||||||| || ||||||||||||| || |  ||||| | |||      
T  29895197 atgaagagggacagcagggaaactttcaatatctctccaaaagtt---acccacagttagaattctgacaatgcttctcttttcaagtggattgcaacaa 29895101  T
Q  132 gacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaa 188  Q
     || ||||||||||||||||  | |||||||||||| |||||||| |||| ||||||    
T  29895100 tacgccaccaccttataagtgccggttgaattgtcataaccaaacctgaacttgaaa 29895044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 29922425 - 29922489
Alignment:
Q  125 gtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaat 189  Q
    ||||||| || ||| |||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  29922425 gtaacggaacgccaacaccttataagtatcagttgaattgtcaaaaccaaatttgaaattgaaat 29922489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 349
Target Start/End: Complemental strand, 29858954 - 29858859
Alignment:
Q  254 agatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcggtcacagaataatcactcaaacagatcaatccattgca 349  Q
    |||||||||||| || ||||||||||||||||| |||||||| |||| ||| ||| || | | ||||| |||| ||||||| ||||| ||||||||    
T  29858954 agatgttgtccttgtggctgggttccataaacggaaccagtaatctcgatactcaccgttgaaagaatcatcagtcaaacaaatcaacccattgca 29858859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 29894996 - 29894951
Alignment:
Q  254 agatgttgtcctggttgctgggttccataaacgaaaccagtactct 299  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  29894996 agatgttgtcctggtggctgggttcgataaacgaaaccagtactct 29894951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 29885001 - 29884953
Alignment:
Q  25 agtccaaatgaagaggaacaataggaaaactttcaatatctctccaaac 73  Q
    |||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  29885001 agtccagatgaagaggaacaactggaaaactttcaatatctctccaaac 29884953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 29106332 - 29106273
Alignment:
Q  254 agatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcggt 313  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||| |||| || |||||    
T  29106332 agatgttgtcctggtggctgggttccataaacggagccagtactctatataatcgtcggt 29106273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 29074597 - 29074552
Alignment:
Q  254 agatgttgtcctggttgctgggttccataaacgaaaccagtactct 299  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||||    
T  29074597 agatgttgtcctggtggctgggttccataaacggagccagtactct 29074552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 29898892 - 29898833
Alignment:
Q  254 agatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcggt 313  Q
    ||||||||||||||| ||||||||||||||||| |   ||||||||  ||||||||||||    
T  29898892 agatgttgtcctggtggctgggttccataaacggagatagtactctagatattcatcggt 29898833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 464
Target Start/End: Original strand, 29431731 - 29431785
Alignment:
Q  410 ggtgaatgacggattctcaattaaatggtgcatggagtaaggaacgacactgcaa 464  Q
    ||||||||| || |||||||||||| || |||||||||| ||||| |||||||||    
T  29431731 ggtgaatgaagggttctcaattaaacggggcatggagtagggaacaacactgcaa 29431785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 15572249 - 15572286
Alignment:
Q  47 aggaaaactttcaatatctctccaaacgttatcaccca 84  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  15572249 aggaaaacaatcaatatctctccaaacgttatcaccca 15572286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 19637571 - 19637615
Alignment:
Q  38 aggaacaataggaaaactttcaatatctctccaaacgttatcacc 82  Q
    |||||| ||||||||||||| ||||| ||||||||| ||||||||    
T  19637571 aggaaccataggaaaactttgaatatttctccaaactttatcacc 19637615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 22021105 - 22021065
Alignment:
Q  44 aataggaaaactttcaatatctctccaaacgttatcaccca 84  Q
    |||||||||||||||||||| ||||||||| ||||| ||||    
T  22021105 aataggaaaactttcaatatttctccaaacattatcgccca 22021065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 22088252 - 22088208
Alignment:
Q  137 caccaccttataagtatcagttgaattgtcacaaccaaacttgaa 181  Q
    ||||||||||||||| || |||||||| ||| |||||||||||||    
T  22088252 caccaccttataagtttctgttgaattatcataaccaaacttgaa 22088208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 29445984 - 29446048
Alignment:
Q  30 aaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaat 94  Q
    ||||||||||||||||  || ||||||| ||| | ||||||||| |||||||| | |||||||||    
T  29445984 aaatgaagaggaacaacggggaaactttgaatctgtctccaaacattatcacctatacttagaat 29446048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 29884793 - 29884761
Alignment:
Q  254 agatgttgtcctggttgctgggttccataaacg 286  Q
    ||||||||||||||| |||||||||||||||||    
T  29884793 agatgttgtcctggtggctgggttccataaacg 29884761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 3561305 - 3561353
Alignment:
Q  34 gaagaggaacaataggaaaactttcaatatctctccaaacgttatcacc 82  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  3561305 gaagaggaacaataggaaaactttcaatatttctccaaacattatcacc 3561353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 11849206 - 11849256
Alignment:
Q  254 agatgttgtcctggttgctgggttccataaacgaaaccagtactctctata 304  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||| ||||    
T  11849206 agatgttgtcctggtggctgggttccataaacggagccagtactctgtata 11849256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 18921079 - 18921121
Alignment:
Q  39 ggaacaataggaaaactttcaatatctctccaaacgttatcac 81  Q
    ||||||||||||||||||| |||||| |||||||| |||||||    
T  18921079 ggaacaataggaaaactttgaatatccctccaaacattatcac 18921121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 18909152 - 18909192
Alignment:
Q  39 ggaacaataggaaaactttcaatatctctccaaacgttatc 79  Q
    ||||||||||||||||||  ||||||||||||||| |||||    
T  18909152 ggaacaataggaaaacttggaatatctctccaaacattatc 18909192  T

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