View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_high_2 (Length: 723)
Name: NF12943_high_2
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 286 - 710
Target Start/End: Complemental strand, 9234302 - 9233878
Alignment:
| Q |
286 |
ttttcaacttcgacatgcaaaatggtagacccgatcccaacaactagaaccattaatttaatctctctttttcatcaattccattcacacaccctccatt |
385 |
Q |
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| T |
9234302 |
ttttcaacctcgacatgcaaaatggtagacccgatcccaacaactagaaccattaatttaatctctctttttcatcaattccattcacacaccctccatt |
9234203 |
T |
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| Q |
386 |
gttttaagcttcagatttctcaactggaacttcttctgctgctggagcttccactgactcaactggtttaacattctcttcctcagcagttactgctgct |
485 |
Q |
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| T |
9234202 |
gttttaagcttcagatttctcaactggaacttcttctgctgctggagcttccactgactcaactggtttaacattctcttcctcagcagttactgctgct |
9234103 |
T |
|
| Q |
486 |
ggtgcttctgactcattttcaatggttgctacaggctcctccactactgctgcagcctcttccttcacttcttcaactgattcctctgtttctttaggtg |
585 |
Q |
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| T |
9234102 |
ggtgcttctgactcattttcaatggttgctacaggctcctccactactgctgcagcctcttccttcacttcttcaactgattcctctgtttctttaggtg |
9234003 |
T |
|
| Q |
586 |
cttctgtattctcttccttggcttcttctgttaccacttccttggtctcaacttcaactggatcttgtgtttctacagcagctggagtttcttctgttgt |
685 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9234002 |
cttctgtattctcttccttggcttcttctgttaccacttccttggtctcaacttcaactggatcttgtgtttctacggcagctggagtttcttctgttgt |
9233903 |
T |
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| Q |
686 |
ttctgttggctgttcggttgtttct |
710 |
Q |
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| T |
9233902 |
ttctgttggctgttcggttgtttct |
9233878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 9234570 - 9234363
Alignment:
| Q |
18 |
aacacaccatgaaaaactcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaatacacaactcatggaatgaaatttcacatcagat |
117 |
Q |
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| T |
9234570 |
aacacaccatgaaaaactcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaatacacaactcatggaatgaaatttcacatcacat |
9234471 |
T |
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| Q |
118 |
gtccaccattcaacatgtatatatatgctgacatggagcaaagttccatacataactgatgtagatagctataccctccatatgaataaccatttccaaa |
217 |
Q |
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| T |
9234470 |
gtccaccattcagcatgtatatatatgctgacatggagtaaagttccatacataactgatgtagatagctataccctccatatgaataaccatttccaaa |
9234371 |
T |
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| Q |
218 |
gacttact |
225 |
Q |
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|||||||| |
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| T |
9234370 |
gacttact |
9234363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 9246010 - 9245933
Alignment:
| Q |
18 |
aacacaccatgaaaaactcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaatacacaactcat |
95 |
Q |
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||||||| | || ||| ||||| ||||||||||||||||||| |||||||||| |||| |||||||||||| |||||| |
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| T |
9246010 |
aacacactacgacaaagtcatggaaccttcccaagaaccatatcaccttatagttgatgacttcaatacacgactcat |
9245933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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