View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_high_20 (Length: 498)
Name: NF12943_high_20
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 7165582 - 7165098
Alignment:
| Q |
1 |
gcataccactgcattaaattcataaaactaatcttaacattaccaaaccgtttactttcgatatcatcaataagcaatttgagctcaaccaatttaccag |
100 |
Q |
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| T |
7165582 |
gcataccactgcattaaattcataaaactaatcttaacattaccaaaccgtttactttcgatatcatcaataagcgatttgagctcaaccaatttaccag |
7165483 |
T |
|
| Q |
101 |
attttgcgagaacagtagcaagagcatgaagggtattttgggtatgtgaaaaattggaactttttgtgttctcaatgatatgaataagggaaagtgcaga |
200 |
Q |
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| T |
7165482 |
attttgcgagaacagtagcaagagcatgaagggtattttgggtatgtgaaaaattggaactttttgtgttctcaatggtatgaataagggaaagtgcaga |
7165383 |
T |
|
| Q |
201 |
atctgcacaaggggcagaacgaagagcgtgagtgaggacgaatgagtcgaataaacggtggtttatgagagtggggagtgtggaattagggttattggaa |
300 |
Q |
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| T |
7165382 |
gtctgcacaaggggcagaacgaagagcgtgagtgaggacgaatgagtcgaataaacggtggtttatgagagtggagagtgtggaattagggttattggaa |
7165283 |
T |
|
| Q |
301 |
cgtagtgaaagccgaattgaatcgatgagcttagcgcggttaaggtagtgagtgatttttgtgggaaaagggtcacgacgacgtgtatagaaacgaattt |
400 |
Q |
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| T |
7165282 |
cgtagtgaaagccgaattgaatcgatgagcttagcacggttaaggtagtgagtgatttttgtgggaaaagggtcacgacgacgtgtatagaaacgaattt |
7165183 |
T |
|
| Q |
401 |
gaatgcgaaattgaaatgctggtttgttgaattcacgaaaaatgggaatcaaattcattgggattaatcagagtttagaatgatg |
485 |
Q |
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| T |
7165182 |
gaatgcgaaattgaaatgctggtttgttgaattcacgaaaaatgggaatcaaattcattgggatttatcagagtttagaatgatg |
7165098 |
T |
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