View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_high_23 (Length: 469)
Name: NF12943_high_23
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 14 - 462
Target Start/End: Original strand, 10937398 - 10937847
Alignment:
| Q |
14 |
ttttctactttttgcttgcaccgtagagtgtctgatctggacattggtgaagatgaggttttgaagcttgccactttgggtaatgggaccaacagtaaag |
113 |
Q |
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| T |
10937398 |
ttttctactttttgcttgcactgtagagtgtctgatctggacattggtgaagacgaggttttgaagcttgccactttgggtaatgggaccaacagtaaag |
10937497 |
T |
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| Q |
114 |
aaacagtcgacacattaacaagatctcttgtcctacggaacaggttaatcttccaaatcttgatttattcacaaaaagttaatttgaaaagttatttgga |
213 |
Q |
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| T |
10937498 |
aaacagtcgacacattaacaagatctcttgtcctgcggaacaggttaatcttccaaatcttgctttattcataaaaagctaatttgaaaagttatttgga |
10937597 |
T |
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| Q |
214 |
ctatagtttccgtatgtgttacgggctggaannnnnnnagacctggctgacgatctgtcatgcttgaggtttggtgtttgtgtgaaatttaaatagatca |
313 |
Q |
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| T |
10937598 |
ctatagtttccgtatgtgttatgagctggaatttttttagatctggccgacgatctgtcatgcttgaggtttggtgtttgtgtgaaatttaaatagatca |
10937697 |
T |
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| Q |
314 |
ggttttctccttggttccctctccccttata-ctgctcattctcaataataggcgaatgagccgggtacacagagtatgagccgagtacaatggaacacc |
412 |
Q |
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| T |
10937698 |
ggttttctccttggttccctctcaccttagacccgctcattctcgataataggagaatgagccgggtacacagagtatgagccgagtacaatggaacacc |
10937797 |
T |
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| Q |
413 |
gtagatgcatgtttttactctgtcagtatgacccgagatgagtataattt |
462 |
Q |
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| T |
10937798 |
gtagatgcatgtttttactcggtcagtatggcccgagatgagtatcattt |
10937847 |
T |
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