View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_high_31 (Length: 398)
Name: NF12943_high_31
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 34 - 380
Target Start/End: Complemental strand, 9660258 - 9659902
Alignment:
| Q |
34 |
atgccagtttttggaagagtcctattcacggagggctctgcaattttagttcaatattttttggttgctattggtattctaattctaagtgccatttcaa |
133 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9660258 |
atgccagtttttggaagagtcctattcatggagtgctctgcaattttagttcaatattttttggttgctattggtattctaattctaagtgccatttcga |
9660159 |
T |
|
| Q |
134 |
tggccgagtgtagtaaattttactgttattaagtgatgtggactaatataatgggtttttgtttttaacactcactttggaattttcatataaaaaattc |
233 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9660158 |
tggccgagtgtagtaaattttactgttattaagtggtgtggactaatataatgggtttttgtttttaacactcactttggaattttcatataaaaaatgc |
9660059 |
T |
|
| Q |
234 |
ttcta----------tgtttccagattttgtaaccatttcaatgagttaggagccactttgttcttttcatgataggttagattttacagctgacattgt |
323 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9660058 |
ttttatatttggtattgtttccagattttgtaaccatttcaatgagttaggagccactttgttcttttcatgataggttagatttaacagctgacattgt |
9659959 |
T |
|
| Q |
324 |
aataagttgtaaatagttttgcaagttgatttctttaacagtagcaagtttatcctg |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9659958 |
aataagttgtaaatagttttgcaagttgatttctttaacagtagcaagtttatcctg |
9659902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 248 - 368
Target Start/End: Complemental strand, 12109283 - 12109163
Alignment:
| Q |
248 |
attttgtaaccatttcaatgagttaggagccactttgttcttttcatgataggttagattttacagctgacattgtaataagttgtaaatagttttgcaa |
347 |
Q |
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||||||||| ||||||||||| ||||| ||||||||| |||||||| |||||| ||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
12109283 |
attttgtaattatttcaatgagctaggacccactttgtacttttcattataggtaagattttacagctgacattgtaaaaagttgtatatagttttgcaa |
12109184 |
T |
|
| Q |
348 |
gttgatttctttaacagtagc |
368 |
Q |
| |
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||||||||| ||| ||||||| |
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| T |
12109183 |
gttgatttccttaccagtagc |
12109163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 361
Target Start/End: Complemental strand, 12104520 - 12104402
Alignment:
| Q |
243 |
tccagattttgtaaccatttcaatgagt---taggagccactttgttcttttcatgataggttagattttacagctgacattgtaataagttgtaaatag |
339 |
Q |
| |
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|||||||| |||| ||||||||||||| ||||| |||| ||| ||||||||||| ||| |||||||||| || ||||| ||| ||||||||||||| |
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| T |
12104520 |
tccagattgtgtatccatttcaatgagcgcctaggacccacattg--cttttcatgatgggtaagattttacaactcacattataaaaagttgtaaatag |
12104423 |
T |
|
| Q |
340 |
ttttgcaagttgatttctttaa |
361 |
Q |
| |
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|||||||| |||||| |||||| |
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| T |
12104422 |
ttttgcaa-ttgattcctttaa |
12104402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 10102894 - 10102949
Alignment:
| Q |
39 |
agtttttggaagagtcctattcacggagggctctgcaattttagttcaatattttt |
94 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||| ||||||||||||||||| |
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|
| T |
10102894 |
agtttttggaagagtcctcttcattgagggctctgcaaatttagttcaatattttt |
10102949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 13856106 - 13856160
Alignment:
| Q |
39 |
agtttttggaagagtcctattcacggagggctctgcaattttagttcaatatttt |
93 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||| |||||||||||||||||||||| |
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|
| T |
13856106 |
agtttttgggagagtcctcttcacagagggctttgcaattttagttcaatatttt |
13856160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 10109391 - 10109445
Alignment:
| Q |
39 |
agtttttggaagagtcctattcacggagggctctgcaattttagttcaatatttt |
93 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||||||||||||| ||| |||| |
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|
| T |
10109391 |
agtttttggaagagtcctctttatggagggctctgcaattttagttaaatttttt |
10109445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 10212298 - 10212244
Alignment:
| Q |
39 |
agtttttggaagagtcctattcacggagggctctgcaattttagttcaatatttt |
93 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||||||||||| ||||||||| |
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| T |
10212298 |
agtttttggaagagtcctcctcaccgaaggctctgcaattttagtacaatatttt |
10212244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 10209747 - 10209698
Alignment:
| Q |
39 |
agtttttggaagagtcctattcacggagggctctgcaattttagttcaat |
88 |
Q |
| |
|
||||||||||||||| || || | |||||||||||||||||||||||||| |
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| T |
10209747 |
agtttttggaagagttctctttatggagggctctgcaattttagttcaat |
10209698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 10105978 - 10106033
Alignment:
| Q |
39 |
agtttttggaagagtcctattcacggagggctctgcaattttagttcaatattttt |
94 |
Q |
| |
|
|||||||||||||||||| || | ||||||||||||| ||||||||||| ||||| |
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|
| T |
10105978 |
agtttttggaagagtcctctttattgagggctctgcaaatttagttcaattttttt |
10106033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 10215904 - 10215876
Alignment:
| Q |
65 |
agggctctgcaattttagttcaatatttt |
93 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
10215904 |
agggctctgcaattttagttcaatatttt |
10215876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 45152083 - 45152128
Alignment:
| Q |
39 |
agtttttggaagagtcctattcacggagggctctgcaattttagtt |
84 |
Q |
| |
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|||||||||||||||||| || ||||||||||||||||| |||||| |
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| T |
45152083 |
agtttttggaagagtcctctttacggagggctctgcaatattagtt |
45152128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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