View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_high_32 (Length: 389)
Name: NF12943_high_32
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 54600792 - 54600415
Alignment:
| Q |
1 |
ctggaagaatagtatcgccacaggatatggttggaaatctgcggtgtatccttatgtcgtgttttttcaacgagcaatcaaggtcatggccatatttgta |
100 |
Q |
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| T |
54600792 |
ctggaagaatagtatcgccacaggatatggttggaaatctgcggtgtatccttatgtcgtgttttttcaatgagcaatcaaggtcatggccatatttgta |
54600693 |
T |
|
| Q |
101 |
ttataatgttcttcttcactttccgatgtatctatgttgtttctgcatttattatgtcgagtcaaggaaaatggccggtattgaggattgttttcatggg |
200 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54600692 |
ttataatattcttcttcactttctgatgtatctatgttgtttctgcatttattacgttgagtcaaggaaaatggccggtattgaggattgttttcatggg |
54600593 |
T |
|
| Q |
201 |
aattgtattccttggaaccaataag-nnnnnnnnataaccgcatgtccacattatttttcctgaagatcttaatatttcaatatatctgtattcatgctt |
299 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54600592 |
aattgtattccttggaaccaataagtttttttttataaccgcatgtccacattatttttccggaagatcttaatatttcaatatatctgtattcatgctt |
54600493 |
T |
|
| Q |
300 |
tctgtttttgaaatgtattcatgctgtctgtttttgaaacaaggcttaaatcctacaaccaacttcttggcgtatatt |
377 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54600492 |
tctgtttttgaaatgtattcatgctttctgtttttgaaacaaggcttaaatcctacaaccaacttcttggcgtatatt |
54600415 |
T |
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