View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12943_high_33 (Length: 372)

Name: NF12943_high_33
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12943_high_33
NF12943_high_33
[»] chr4 (5 HSPs)
chr4 (1-372)||(2666965-2667330)
chr4 (1-372)||(2675983-2676348)
chr4 (2-271)||(2682012-2682281)
chr4 (4-65)||(2666935-2666996)
chr4 (4-66)||(2675953-2676015)


Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 2666965 - 2667330
Alignment:
Q  1 gaaacagcccaagctgcaaaggagaaaacccagcaagcagcccaagcaacaaaggataaaacccaagacacaactggtcaagcaagagacaagggttatg 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2666965 gaaacagcccaagctgcaaaggacaaaacccagcaagcagcccaagcaacaaaggataaaacccaagacacaactggtcaagcaagagacaagggttatg 2667064  T
Q  101 aaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactcagctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2667065 aaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactcagctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaagg 2667164  T
Q  201 tgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaagacaaggaccatttcacaacaaaaacaactacaacaacccgtcgtaacgtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2667165 tgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaagacaaggaccatttcacaacaaaaacaactacaacaacccgtcgtaacgtc 2667264  T
Q  301 gttgattgagattattagctactaatactatgtttcaataatcttgtattgtaatttgtttttcttgaattt 372  Q
    |||||||||||||||||||      ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  2667265 gttgattgagattattagc------tactatgtttcgataatgttgtattgtaatttgtttttcttgaattt 2667330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 2675983 - 2676348
Alignment:
Q  1 gaaacagcccaagctgcaaaggagaaaacccagcaagcagcccaagcaacaaaggataaaacccaagacacaactggtcaagcaagagacaagggttatg 100  Q
    |||||||||||||| |  ||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2675983 gaaacagcccaagcagtcaaggataaaacccaacaaacagcccaagcaacaaaggataaaacccaagacacaactggtcaagcaagagacaagggttatg 2676082  T
Q  101 aaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactcagctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2676083 aaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactcagctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaagg 2676182  T
Q  201 tgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaagacaaggaccatttcacaacaaaaacaactacaacaacccgtcgtaacgtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2676183 tgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaagacaaggaccatttcacaacaaaaacaactacaacaacccgtcgtaacgtc 2676282  T
Q  301 gttgattgagattattagctactaatactatgtttcaataatcttgtattgtaatttgtttttcttgaattt 372  Q
    |||||||||||||||||||      ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  2676283 gttgattgagattattagc------tactatgtttcgataatgttgtattgtaatttgtttttcttgaattt 2676348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 2 - 271
Target Start/End: Original strand, 2682012 - 2682281
Alignment:
Q  2 aaacagcccaagctgcaaaggagaaaacccagcaagcagcccaagcaacaaaggataaaacccaagacacaactggtcaagcaagagacaagggttatga 101  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| ||||| || || |  ||    
T  2682012 aaacagcccaagctgcaaaggagaaaacccagcaagcagctcaagcaacaaaggaaaaagcccaagacacaactggtcaagctagagaaaaaggatcgga 2682111  T
Q  102 aatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactcagctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggt 201  Q
     || |||||| | || ||||||||||||||||||||||| ||||||||||| ||||| || || |||||||| || ||||||||||||||||| ||| ||    
T  2682112 gattggccagtcaaccaaagaaactgcccaatcaggaaaagacaactcagcagggttcttacagcagacaggagaaaaggttaagggtatggcccaaagt 2682211  T
Q  202 gcaactgaagcagttaagaacactttaggaatgaataatgatgaggaagacaaggaccatttcacaacaa 271  Q
    || ||||||||||||||||||||||| ||||||    |||| |||||||| ||||||||| |||||||||    
T  2682212 gctactgaagcagttaagaacacttttggaatggcacatgacgaggaagataaggaccatatcacaacaa 2682281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 2666935 - 2666996
Alignment:
Q  4 acagcccaagctgcaaaggagaaaacccagcaagcagcccaagcaacaaaggataaaaccca 65  Q
    |||||||||||||||||||||||||||||  || ||||||||||  ||||||| ||||||||    
T  2666935 acagcccaagctgcaaaggagaaaacccaagaaacagcccaagctgcaaaggacaaaaccca 2666996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 2675953 - 2676015
Alignment:
Q  4 acagcccaagctgcaaaggagaaaacccagcaagcagcccaagcaacaaaggataaaacccaa 66  Q
    ||||||||||| || ||||||||||||||| || |||||||||||   |||||||||||||||    
T  2675953 acagcccaagcagctaaggagaaaacccaggaaacagcccaagcagtcaaggataaaacccaa 2676015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University