View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12943_high_34 (Length: 368)
Name: NF12943_high_34
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_high_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 44865094 - 44864735
Alignment:
| Q |
1 |
agtgacctaaatttgtaacccacatgtttgatcgttcaattgtggcctctctctatcgtcgtgccctcgtttttctctgctctcgtttcaatatttcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44865094 |
agtgacctaaatttgtaacccacatgtttgatcgttcaattgtggcctctctctatcgtcgtgccctcgtttttctctgctctcgtttcaatatttcttt |
44864995 |
T |
|
| Q |
101 |
gctttgctcgagttctgcttcgttgccttgctctcgttcgagttcttctctgtttcctgatctgctgccattgttgttctccttgatcgttcaattgtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44864994 |
gctttgctcgagttctgcttcgttgccttgctctcgttcgagttcttctctgtttcctgatctgctgccattgttgttctccttgatcgttcaattgtgt |
44864895 |
T |
|
| Q |
201 |
ggcctcttgttcgtgctctgttttgtgttctgctatcatcgttgctctgtttaagtttagggtttgtgcttcttctgcgtgttttgtttgccttattctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44864894 |
ggcctcttgttcgtgctctgttttgtgttctgctatcatcgttgctctgtttaagtttagggtttgtgcttcttctgcgtgttttgtttgccttattctt |
44864795 |
T |
|
| Q |
301 |
gctctgttctgtctgctctgctatgtttgtgagagcaatggcatcatccacaggttctgc |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
44864794 |
gctctgttctgtctgctctgctatgtttgtgagagcaatggcatcatcctccggttctgc |
44864735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University