View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_high_35 (Length: 365)
Name: NF12943_high_35
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 45669022 - 45669354
Alignment:
| Q |
9 |
gaagaatattcacacgtgaaagacattaaggaaggtgtatatattatgagcatttcattatgaaatttgaatttttatttcaataataaatactatgtga |
108 |
Q |
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| T |
45669022 |
gaagaatattcacacgtgaaagacaataaggaaggtgtatatattatgagcatttcattatgaaatttgaatttttattacaataataaata---tgtga |
45669118 |
T |
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| Q |
109 |
tgtttcagtagagtacttgattgcttacaaaatcataacccatataggtctgaatctcgttgagtacccatcttcttcttgtccttttcaagtaaaagac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45669119 |
tgtttcagtagagtacttgattgcttacaaaatcataacccatataggtctgaatctcgttgagtacccatcttcttcttgtccttttcaagtaaaagac |
45669218 |
T |
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| Q |
209 |
acaaaagaagtgcttagttacgttaccctcgtaaatgagccatctcgaagcttgccagattggttagttttagtgtatgaattgataaaaattgattttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45669219 |
acaaaagaagtgcttagttacgttaccctcgtaaatgagccatcacgaagcttgccagattggttagttttagtgtatgaattgataaaaattgattttt |
45669318 |
T |
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| Q |
309 |
gtttaataatcaaaattgaattaaaatatgtataag |
344 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
45669319 |
gtttaataatcaaaattgaattaaaatatgtataag |
45669354 |
T |
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