View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_high_36 (Length: 362)
Name: NF12943_high_36
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 4 - 345
Target Start/End: Original strand, 10581638 - 10581979
Alignment:
| Q |
4 |
ggaggagcacagactagaataccaacatcaacatggccccatttctctgacattgattcaaaaatctctgcaatataaagtttccatattagtaacctct |
103 |
Q |
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| T |
10581638 |
ggaggaccacaaactagaatacctacatcaacatggccccatttctctgacattgattcaaaaatctctgcaatataaagtttccatattagtaacctct |
10581737 |
T |
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| Q |
104 |
aaaagaaagggactaatactggcttctaaccatacaattaattgaactggttttctaatagatatcttcacttgactagaaccaggctcatgataagtga |
203 |
Q |
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| T |
10581738 |
aaaagaaagggactaatactggcttctaaccatacaattaattgaactggttttctaatagatatcttcacttgactagaaccaggctcatgataagtga |
10581837 |
T |
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| Q |
204 |
ttcaaaataagctttatacatgtaaagtaagtatgtgtatctcaaagcaaggttatcaaatcaatattcaaattgtgaatgagaagacctatttttcaaa |
303 |
Q |
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| T |
10581838 |
ttcaaattaagctttatacatgtaaagtaagtatgtgtatctcaaagcaaggttatcaaatcaatattcaaattatgaatgagaagacctatttttcaaa |
10581937 |
T |
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| Q |
304 |
tcggatcctaagatacactaccgataaagatatgacattttt |
345 |
Q |
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| T |
10581938 |
tcggatcctaagatacactaccgataaagatatgacattttt |
10581979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 6430784 - 6430734
Alignment:
| Q |
254 |
ggttatcaaatcaatattcaaattgtgaatgagaagacctatttttcaaat |
304 |
Q |
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| T |
6430784 |
ggttatcaaatcgagattcaaattgtgaatcaaaagacctattttccaaat |
6430734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 28577362 - 28577318
Alignment:
| Q |
254 |
ggttatcaaatcaatattcaaattgtgaatgagaagacctatttt |
298 |
Q |
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|||||||||||| ||||||||||||||||| ||| ||||||||| |
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| T |
28577362 |
ggttatcaaatctatattcaaattgtgaatcggaacacctatttt |
28577318 |
T |
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