View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_high_37 (Length: 354)
Name: NF12943_high_37
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 4 - 340
Target Start/End: Complemental strand, 33433489 - 33433151
Alignment:
| Q |
4 |
cacagatgaataagcacaactcaaaacaatcccacaaaatgaatatagaaataaaatgaacaaattttgtacatgaaaatgcgcaattgttgacttgaca |
103 |
Q |
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|||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
33433489 |
cacagatgaacaagcacaactcaatacaatcccaccaaatgaatatagaaataaaatgaacaaattttctacctgaaaatgcgcaattgttgacttgaca |
33433390 |
T |
|
| Q |
104 |
agcctggtattgaactgaaaatcatagaaggaatttcctttctccacttccaagcattcctaataaccgaaag---nnnnnnnntatacaaagtttagaa |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33433389 |
agcctggtattgaactgaaaatcatagaacgaatttcctttctccacttccaagcattcctaataaccgaaagaaaaaaaaaaatatacaaagtttagaa |
33433290 |
T |
|
| Q |
201 |
aagtgaaaaccgcaacgaaatttgtaacagtaactttccacagtaaaaaagaaattaaccttgtcaaggtcctcacgagagcgcgtgagactttcgtagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33433289 |
aagtgaaaaccgcaacgaaatttgtaacagtaactttccacaat-aaaaagaaattaaccttgtcaaggtcctcacgagagcgcgtgagacattcgtagt |
33433191 |
T |
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| Q |
301 |
tcttatactgtttcaaacgagtttcacgatattcatctct |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33433190 |
tcttatactgtttcaaacgagtttcacgatattcatctct |
33433151 |
T |
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