View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_high_38 (Length: 345)
Name: NF12943_high_38
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 96 - 329
Target Start/End: Complemental strand, 28539176 - 28538939
Alignment:
| Q |
96 |
caagagacatggcaaggaccaaaacgacccccaccctctaaaaatctcccctagaaccaaaactacctcacgagacaatcctttagattccaaggccact |
195 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28539176 |
caagagacatgacaaggaccaaaacgacccccaccctctaaaaatctctcctagaaccaaaactacctcacgagacaatcctttagattccaacgccact |
28539077 |
T |
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| Q |
196 |
catgaaacaagaaagatagaatcttaagtccactcaatgtccaatgttaagataacaccttaatatccttcagtaactcttccgcatcctttacctcatt |
295 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |
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| T |
28539076 |
catgaaacaaaaaagatggaatcttaagtccactcaatgtccaatgttaagataacaccttaatatccttcactaactcttctgcttcctttacctcatt |
28538977 |
T |
|
| Q |
296 |
----ttttaaagattctttaatttctaagactccacat |
329 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
28538976 |
ttttttttaaagattctttaatttctaagactccacat |
28538939 |
T |
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