View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12943_high_4 (Length: 663)

Name: NF12943_high_4
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12943_high_4
NF12943_high_4
[»] chr3 (1 HSPs)
chr3 (3-647)||(48171875-48172519)


Alignment Details
Target: chr3 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 3 - 647
Target Start/End: Complemental strand, 48172519 - 48171875
Alignment:
Q  3 aggagcagcacagacacaagatacattagagataaacagttcccaagaggaacaaaatcagctcaaactcagaaaactgtcacggtgtctggggtttgtt 102  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48172519 aggagcagaacaaacacaagatacattagagataaacagttcccaagaggaacaaaatcagctcaaactcagaaaactgtcacggtgtctggggtttgtt 48172420  T
Q  103 gaatggtcgtaaaaaatgatgctttgttatgcataaaactagccactagctcaagaatcaatgtgnnnnnnnaagcaaaaacaatcaacgttacactgca 202  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||        || ||||||||||||||||||||||||    
T  48172419 gaatggtcgtaaaaaatgatgtgttgttatgcataaaactagccaccagctcaagaatcaatgtgttttttttagtaaaaacaatcaacgttacactgca 48172320  T
Q  203 cgctctctgagtacacaatttggcagtttaataaagtagcagactacaagcccaacttttcccattcaatcatcttgacaaaagtatttgctttactttg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48172319 cgctctctgagtacacaatttggcagtttaataaagtagcagactacaagcccaacttttcccattcaatcatcttgacaatagtatttgctttactttg 48172220  T
Q  303 ggcaacgcctgcaaaatgtagttaagaacattaggacagaataagaaatagtatggtagtagtagaaatatttatttagcacaacaaattattcaaactg 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48172219 ggcaacgcctgcaaaatgtagttaagaacattaggacagaataagaaatagtatggtagtagtagaaatatttatttagcacaacaaattattcaaactg 48172120  T
Q  403 ttcccacaatatgttgttttgttcaaacataaaggatacacatgtgatggcctcttctgcagtacaatcttccctgctgcatacaaagccattcatattc 502  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48172119 ttcccacaatatgttgtttagttcaaaaataaaggatacacatgtgatggcctcttctgcagtacaatcttccctgctgcatacaaagccattcatattc 48172020  T
Q  503 tacatcaattaccatcacagaaattatttatcaattatcaatcataaaacaacaacaataacaaagttcataccagcaaggtgcaactcaagtgacaaac 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48172019 tacatcaattaccatcacagaaattatttatcaattatcaatcataaaacaacaacaataacaaagttcataccagcaaggtgcaactcaagtgacaaac 48171920  T
Q  603 agacaatgataacaattctacaaacgatttcactaaggttcaaaa 647  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  48171919 agacaatgataacaattctacaaacgatttcactaaggttcaaaa 48171875  T

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