View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12943_high_42 (Length: 311)

Name: NF12943_high_42
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12943_high_42
NF12943_high_42
[»] chr7 (32 HSPs)
chr7 (19-300)||(8545728-8546008)
chr7 (29-300)||(8581805-8582076)
chr7 (19-300)||(8570406-8570687)
chr7 (26-300)||(8576428-8576702)
chr7 (29-299)||(8559438-8559708)
chr7 (29-300)||(8602079-8602350)
chr7 (29-297)||(8538141-8538409)
chr7 (19-279)||(8382689-8382949)
chr7 (29-296)||(8610022-8610289)
chr7 (29-300)||(8636135-8636406)
chr7 (29-300)||(8646982-8647253)
chr7 (32-298)||(17268047-17268313)
chr7 (29-297)||(6789617-6789885)
chr7 (26-300)||(29581633-29581907)
chr7 (29-285)||(8585513-8585769)
chr7 (26-300)||(29577461-29577738)
chr7 (29-228)||(8667524-8667723)
chr7 (154-300)||(7877525-7877671)
chr7 (32-288)||(17260349-17260605)
chr7 (29-300)||(13333248-13333519)
chr7 (29-279)||(8628637-8628887)
chr7 (29-228)||(10494238-10494437)
chr7 (29-301)||(8659468-8659740)
chr7 (48-300)||(3147388-3147648)
chr7 (153-300)||(8590867-8591014)
chr7 (29-300)||(27830667-27830938)
chr7 (26-241)||(8654552-8654767)
chr7 (154-228)||(8671494-8671568)
chr7 (89-198)||(6786816-6786925)
chr7 (80-132)||(1301616-1301668)
chr7 (83-123)||(8590797-8590837)
chr7 (92-228)||(39985814-39985950)
[»] chr8 (2 HSPs)
chr8 (29-300)||(12528609-12528880)
chr8 (65-300)||(43744990-43745223)
[»] chr2 (9 HSPs)
chr2 (31-287)||(11999501-11999757)
chr2 (29-300)||(12245198-12245469)
chr2 (88-298)||(7542390-7542600)
chr2 (29-285)||(16661799-16662055)
chr2 (29-300)||(12258373-12258644)
chr2 (29-300)||(12234794-12235065)
chr2 (29-203)||(43625517-43625691)
chr2 (29-300)||(16657309-16657580)
chr2 (74-300)||(14703558-14703784)
[»] chr1 (3 HSPs)
chr1 (29-300)||(34466585-34466856)
chr1 (29-297)||(15595139-15595414)
chr1 (26-134)||(4678516-4678624)
[»] chr4 (3 HSPs)
chr4 (31-297)||(30775359-30775625)
chr4 (32-300)||(35132556-35132824)
chr4 (74-228)||(9335755-9335909)
[»] chr5 (1 HSPs)
chr5 (88-300)||(28220115-28220327)
[»] chr6 (1 HSPs)
chr6 (29-216)||(28910687-28910874)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 8545728 - 8546008
Alignment:
Q  19 ttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatca 118  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8545728 ttcaccgcctaggtaagtgtctccagcagtggccttgacatcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaaggtca 8545827  T
Q  119 aagataaaaatatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacattta 218  Q
    |||||||||||||||||||  ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8545828 aagataaaaatatttctcttatcaac-caattagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacattta 8545926  T
Q  219 gaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
    |||| |||||||||||||||||||| |||| ||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  8545927 gaccggcaatttcacctgcatcttttgtggatctttgttgtgaatcattaaaataagcaggtacagtaatcactgcattctt 8546008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 29 - 300
Target Start/End: Original strand, 8581805 - 8582076
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    ||||||||||||||||||||||||||||||||| || | ||||| |||| ||| |||||||||||||||||||||||||| ||||| |||||||||||||    
T  8581805 aggtgagtgtctccagcagtggccttgacttcatagtcgttattcttaactgtgagaatagacacatcaaaagttccacctccaaggtcaaagataaaaa 8581904  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    |||||||||  |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  8581905 tatttctcttatcaacacaattagctctcttttgaaggccatatgcaagagctgccgcagtcggttcattgattatccgcattacattgagacctgcaat 8582004  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8582005 ttcacctgcatctttagtggctcttcgttgtgaatcattaaaataagcaggtacagtaatcactgcattctt 8582076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 8570406 - 8570687
Alignment:
Q  19 ttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatca 118  Q
    |||||| || ||||||||||||||||||||||||||||||||| ||   ||||  |||| ||| |||||||||||||||||||||||||||||||| |||    
T  8570406 ttcacctcccaggtgagtgtctccagcagtggccttgacttcatagttgttatccttaactgtgagaatagacacatcaaaagttccaccgccaaggtca 8570505  T
Q  119 aagataaaaatatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacattta 218  Q
    |||||||||||||||||||  |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |    
T  8570506 aagataaaaatatttctcttatcaacaaaattagctctcttttgaaggccatatgcaagagctgccgcagtcggttcattgattatccgcattacattga 8570605  T
Q  219 gaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8570606 gaccagcaatttcacctgcatctttagtggctcttcgttgtgaatcattaaaataagcaggtacagtaatcactgcattctt 8570687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 26 - 300
Target Start/End: Original strand, 8576428 - 8576702
Alignment:
Q  26 cctaggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataa 125  Q
    ||||||||||||||||| ||||||||||||||||| ||||| || || |||| ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  8576428 cctaggtgagtgtctccggcagtggccttgacttcgaagacattgttcttaactgtgagaatagacacatcaaaagttccaccgccaaggtcaaagataa 8576527  T
Q  126 aaatatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagc 225  Q
    |||||||||| |  |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  8576528 aaatatttcttttatcaacacaattagctctcttttgaaggccatacgcaagagctgccgcagtcggttcattgattatctgcatgacattgagaccagc 8576627  T
Q  226 aatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
    |||| |||||||||||||||||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||    
T  8576628 aattgcacctgcatctttagtggctcttcgttgggaatcattaaaataagcaggcacagaaatcactgcattctt 8576702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 29 - 299
Target Start/End: Original strand, 8559438 - 8559708
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    ||||| |||||||| | ||||||||||||||||||||  ||||| |||||||| |||| ||| ||||||||||||||||| || ||||||||||| ||||    
T  8559438 aggtgtgtgtctccggaagtggccttgacttcaaagagattattcttaattgtgagaagagaaacatcaaaagttccaccaccgagatcaaagatgaaaa 8559537  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    |||||||||||| |||||| |||| |||||||||||| |||||||||||||| || ||||| ||||||||||||||| |||| ||||| |||||||||||    
T  8559538 tatttctctctttaacacaattagatctcttttgaagtccatatgcaagagcagctgcagttggttcattgattatctgcattacattaagaccagcaat 8559637  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattct 299  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||| |||||||    
T  8559638 ttcacctgcatctttggtggctcttctttgagaatcattaaaataagcaggtacggtaatcacagcattct 8559708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 29 - 300
Target Start/End: Original strand, 8602079 - 8602350
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    ||||| |||||||| | ||||||||||||||||||||  ||||| |||||||| |||| ||| ||||||||||||||||| ||||||||||| || ||||    
T  8602079 aggtgtgtgtctccggaagtggccttgacttcaaagagattattcttaattgtgagaagagaaacatcaaaagttccaccaccaagatcaaatatgaaaa 8602178  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||| ||||| |||||||||||    
T  8602179 tatttctctcttcaacacaattagctctcttttgaaggccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaat 8602278  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
      |||| |||||||| |||||| |||  || ||||||||||||||||| || |||||||  |||||||||||    
T  8602279 ggcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccggcacagtaacaactgcattctt 8602350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 29 - 297
Target Start/End: Original strand, 8538141 - 8538409
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||| ||||| |||||||||||||||  |||| | ||||| || | |||||| | ||| ||||||||||||||||| |||||||||||||| ||||    
T  8538141 aggtgagtatctccggcagtggccttgactgtaaaggcattattcttcaatgtaaggagagatacatcaaaagttccaccaccaagatcaaagatgaaaa 8538240  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
      ||||||||||||||||| |||||||||||||||||||| ||||||||||| || || || |||||||||||||||||||| ||||| || ||||||||    
T  8538241 cttttctctcttcaacacaattagctctcttttgaaggccgtatgcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaat 8538340  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcatt 297  Q
      |||| |||||||| ||||||||||  ||||||||||| |||||||||||||| ||||||||||||||    
T  8538341 gacaccagcatctttggtggctcttcgctgtgaatcattgaaataagcaggtactgtaatcactgcatt 8538409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 8382949 - 8382689
Alignment:
Q  19 ttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatca 118  Q
    |||||| ||||| ||||||||||| ||||||||||| ||  ||||||| ||||| |||||||| || | ||||||||||||||||||||| |||||||||    
T  8382949 ttcacctcctagatgagtgtctccggcagtggccttcacaacaaagacattattcttaattgtgaggagagacacatcaaaagttccaccaccaagatca 8382850  T
Q  119 aagataaaaatatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacattta 218  Q
    ||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||| ||||| |    
T  8382849 aagatgaaaatatttctctcttcaagacaattagctctcttctgaaggccatatgcaagagcagcggcagttggctcattgattatccgcattacattga 8382750  T
Q  219 gaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcagg 279  Q
    | ||||||||  |||| |||||||| |||||| | | ||| |||||||| ||||| |||||    
T  8382749 ggccagcaatcgcaccagcatcttttgtggctttccgttgagaatcattgaaatatgcagg 8382689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 29 - 296
Target Start/End: Original strand, 8610022 - 8610289
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||| ||||||||||| |||||||| || ||  | || ||||||||||| |||| ||||||||| ||||| ||||| |||||||||||||||||||    
T  8610022 aggtgagtatctccagcagtagccttgacatcgaaagcattgtttttaattgtgagaacagacacatcgaaagtcccaccaccaagatcaaagataaaaa 8610121  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    ||||||| | ||| ||||| ||||||||||| ||||| ||||||||||||||||| || || ||||||||||| ||||| || ||||| || |||| |||    
T  8610122 tatttctattttccacacaattagctctcttctgaagaccatatgcaagagccgcagccgttggttcattgataatccggattacattaaggccagaaat 8610221  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcat 296  Q
      |||| |||||||| |||||| | |  || |||||||||||||||||||| ||||| ||||||||||    
T  8610222 gacaccagcatcttttgtggctttccgctgagaatcattaaaataagcaggcacagtgatcactgcat 8610289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 29 - 300
Target Start/End: Complemental strand, 8636406 - 8636135
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    ||||| |||||||| |||||||| || ||||||||||| | |  ||||||| | || |||||||| || || || ||||| ||||||||||| |  ||||    
T  8636406 aggtgtgtgtctccggcagtggctttaacttcaaagacttcacctttaattttgagtatagacacgtcgaatgtaccaccaccaagatcaaatacgaaaa 8636307  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    | |||||||||| |||||||||| ||||||||||||| ||||| |||| ||| || ||||| ||||||||||||||||| || ||||| || || |||||    
T  8636306 tgtttctctctttaacacagttacctctcttttgaagtccatacgcaaaagctgcagcagttggttcattgattatccgaattacattaaggccggcaat 8636207  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
      |||| |||||||| |||| | | |  || |||||||| |||||||| || |||||||| |||||||||||    
T  8636206 ggcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaatgactgcattctt 8636135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 300
Target Start/End: Original strand, 8646982 - 8647253
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||||| |||||| ||||| || || | |||||||||||  ||||||||||| | ||||||||||||||||||||| ||||| || ||||| || |    
T  8646982 aggtgagtgtttccagcggtggctttaacatgaaagaccttatccttaattgtaaggagagacacatcaaaagttccaccaccaaggtcgaagatgaata 8647081  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    ||||||  |||||| |||| || | |||||| | |||||||||||| ||||| || || || ||||||||||||||||| |||| ||| || ||||||||    
T  8647082 tatttcgttcttcagcacaatttgttctcttgtcaaggccatatgcgagagcagcagctgttggttcattgattatccggatgatattaaggccagcaat 8647181  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
      | || |||||| |||||||| |||  ||  ||||||| || || ||||| |||||||  |||||||||||    
T  8647182 ggccccggcatctatagtggcttttcgctgataatcattgaagtatgcaggcacagtaacaactgcattctt 8647253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 32 - 298
Target Start/End: Original strand, 17268047 - 17268313
Alignment:
Q  32 tgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaatat 131  Q
    |||||||||||| | |||||||| ||||| ||||||||||  ||||||||||  | ||||||||||||||| ||||| ||||| ||||||| ||||||||    
T  17268047 tgagtgtctccaccggtggccttaacttcgaagaccttatccttaattgtaacgagagacacatcaaaagtcccaccaccaaggtcaaagacaaaaatat 17268146  T
Q  132 ttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaatttc 231  Q
    | |  |||||||||||||||| ||||||   |||||||||||||| ||| || ||||| ||||||||||||| |  ||  ||||| || ||||||||  |    
T  17268147 tccgttcttcaacacagttagttctcttgccaaggccatatgcaatagctgcagcagttggttcattgattaccttcaatacattaaggccagcaatgac 17268246  T
Q  232 acctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattc 298  Q
    ||| |||||| | |||||| |||  || ||||| || || ||||| || |||||||| || ||||||    
T  17268247 accagcatctatggtggcttttcgctgagaatcgttgaagtaagccgggacagtaatgacagcattc 17268313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 29 - 297
Target Start/End: Original strand, 6789617 - 6789885
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||||| |||| | |||||||| ||||  |||||||||| ||| ||||| |  ||||||||||| ||||| ||||| ||||| || ||||  ||||    
T  6789617 aggtgagtgtttccaccggtggccttaacttggaagaccttatctttgattgttaagatagacacatcgaaagtgccaccaccaaggtcgaagacgaaaa 6789716  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    ||||| | ||| || |  | |||| |||||| | |||||||||||||||||| || || || |||||||||||||| || || ||||| |||||||||||    
T  6789717 tatttttttctccaccgtaattagttctcttatcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaat 6789816  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcatt 297  Q
      |||| ||||||  ||||||| | | ||| |||||||| ||||||||||| |||||||| ||||||||    
T  6789817 ggcaccagcatctaaagtggctttccgttgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 300
Target Start/End: Complemental strand, 29581907 - 29581633
Alignment:
Q  26 cctaggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataa 125  Q
    ||||||||||| || |||||||||||||| ||||||||    | ||  || | ||| |||| ||||||||||||||| ||||| |||||||||||||| |    
T  29581907 cctaggtgagtatcgccagcagtggccttcacttcaaacttatcatccttgagtgtgagaagagacacatcaaaagtgccaccaccaagatcaaagatga 29581808  T
Q  126 aaatatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagc 225  Q
    | |||||||  | | ||||| | ||| ||| ||||||||  ||||||||||| || || ||||| ||||| |||||||||| ||| ||||| || |||||    
T  29581807 atatatttcgttttccaacaaaattacctcccttttgaataccatatgcaagtgcagcagcagttggttcgttgattatcctcattacattgaggccagc 29581708  T
Q  226 aatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
     ||    || |||||||| |||||| |||  || |||||||| ||||||||||| || |||||||||||||||||    
T  29581707 tataatgccagcatctttggtggcttttcgctgagaatcattgaaataagcaggcacggtaatcactgcattctt 29581633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 29 - 285
Target Start/End: Complemental strand, 8585769 - 8585513
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||| | |||||| || || || ||||||||||| | |  ||||||||| || | ||||||||||||||| ||||| ||||||||||| | |||||    
T  8585769 aggtgagtatttccagcggttgctttaacttcaaagacatcacctttaattgtgaggagagacacatcaaaagtcccaccaccaagatcaaacacaaaaa 8585670  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    ||||||  ||  || |||||||| || | || | |||||||||||||| ||| || ||||| |||||||||||||||| ||| ||||| || ||||||||    
T  8585669 tatttcgttcaccatcacagttacctttgttgtcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaat 8585570  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagt 285  Q
      |||| |||||  | |||||| |||  || |||||||| ||||||||||| |||||    
T  8585569 ggcaccagcatccatggtggcttttcgctgagaatcattgaaataagcaggcacagt 8585513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 300
Target Start/End: Complemental strand, 29577738 - 29577461
Alignment:
Q  26 cctaggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataa 125  Q
    ||||||||||| || |||||||||||||| ||||||||    | ||  |||| ||| |||| |||||||||||| || ||||| |||||||||||||| |    
T  29577738 cctaggtgagtatcaccagcagtggcctttacttcaaaactatcatccttaagtgtgagaagagacacatcaaaggtgccaccaccaagatcaaagatga 29577639  T
Q  126 aaatatttctctcttcaacac---agttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagacc 222  Q
    | | ||||| || | |||||    | ||| ||||||||||||  ||||||||||| || || ||||| |||||||||||||||||||| ||||| || ||    
T  29577638 atacatttcgctttccaacaacaaaattacctctcttttgaattccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggcc 29577539  T
Q  223 agcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
    ||||||    || |||||||| |||||| |||  || |||||||| |||||||| || || || ||||||||||||||    
T  29577538 agcaataatgccggcatctttggtggcttttcgctgagaatcattgaaataagctggcactgtgatcactgcattctt 29577461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 29 - 228
Target Start/End: Original strand, 8667524 - 8667723
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||||| ||| |||||||| || ||||||||||| | |   |||||||| || ||||||||||||||||| || || || |||||||||| |||||    
T  8667524 aggtgagtgtttcctgcagtggctttcacttcaaagacatcacccttaattgtgaggatagacacatcaaaagtcccgccacccagatcaaagacaaaaa 8667623  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    ||||||      || |||||| |  |||||| | |||||||||||||| ||| |||||||| ||||||||||||||||| |||||||| || ||||||||    
T  8667624 tatttcggctaccatcacagtcatttctcttgtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaat 8667723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 154 - 300
Target Start/End: Complemental strand, 7877671 - 7877525
Alignment:
Q  154 tctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaatttcacctgcatctttagtggctctt 253  Q
    |||||||||||||||||||||||| || || ||||| |||||||| ||||||||||| ||||| || || |||| | |||| |||||||| |||||| ||    
T  7877671 tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatcttttgtggctttt 7877572  T
Q  254 cattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
    | ||| |||||||| |||||||| || |||||||  |||||||||||    
T  7877571 cgttgagaatcattgaaataagccggcacagtaacaactgcattctt 7877525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 288
Target Start/End: Original strand, 17260349 - 17260605
Alignment:
Q  32 tgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaatat 131  Q
    |||||||||||| | |||||||| ||||| ||||||||||  ||||||||||  | ||||||||||||||| || || ||||| ||||||| ||||||||    
T  17260349 tgagtgtctccaccggtggccttaacttcgaagaccttatccttaattgtaacgagagacacatcaaaagtccccccaccaaggtcaaagacaaaaatat 17260448  T
Q  132 ttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaatttc 231  Q
    | |   ||| |||||| |||| ||||||   |||||||||||||| ||| || ||| | |||||||| |||| |  ||  ||||  || ||||||||  |    
T  17260449 tccgtacttaaacacaattagttctcttgacaaggccatatgcaatagctgcagcaataggttcattaattaacttcaaaacataaaggccagcaataac 17260548  T
Q  232 acctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaat 288  Q
    ||| |||||| | |||||| |||  || |||||||| ||||||||||| ||||||||    
T  17260549 accagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaat 17260605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 300
Target Start/End: Complemental strand, 13333519 - 13333248
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||||| ||| || ||||| || ||||||||||| | |    |||||||||| ||||||||||||||||| ||||| || |||||||||| |||||    
T  13333519 aggtgagtgtttcctgcggtggcttttacttcaaagacatcacccataattgtaaggatagacacatcaaaagtaccaccacccagatcaaagacaaaaa 13333420  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    |||||| ||   || |||| | |  |||||| | |||||||||||||| ||| || ||||| |||||||||||||| || |||| ||| || ||||||||    
T  13333419 tatttcgcttaccatcacaatcacgtctcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaat 13333320  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
      |||| |||||| | |||||  |||  || |||||||| || ||||| || |||||||  || ||||||||    
T  13333319 agcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcacagtaacaacggcattctt 13333248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 29 - 279
Target Start/End: Original strand, 8628637 - 8628887
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||| | |||||||||||| || ||||||||||| | |  ||||||||| || | ||||||||||||||| ||||| ||||||||||| | |||||    
T  8628637 aggtgagtatttccagcagtggctttaacttcaaagacatcacctttaattgtgaggagagacacatcaaaagtcccaccaccaagatcaaacacaaaaa 8628736  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    ||||||  ||  || ||||  || || | || | |||||||||||||| ||| || ||||| || ||||||||||||| ||| ||||| || ||||||||    
T  8628737 tatttcgttcaccatcacacctacctttgttgtcaaggccatatgcaatagctgcagcagtggggtcattgattatcctcataacattaaggccagcaat 8628836  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcagg 279  Q
      |||| ||||   | |||||| |||  || |||||||| |||||||||||    
T  8628837 ggcaccagcattcatggtggcttttcgctgagaatcattgaaataagcagg 8628887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 228
Target Start/End: Complemental strand, 10494437 - 10494238
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    ||||||||||  || |||||||| || ||||||||||| | |   |||||||| || ||||||||||||||||| ||||| || |||||||||| |||||    
T  10494437 aggtgagtgttacctgcagtggcttttacttcaaagacatcacccttaattgtgaggatagacacatcaaaagtaccaccacccagatcaaagacaaaaa 10494338  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    ||||||  |   |  |||| | |  |||||| | |||||||||||||| ||| || ||||| ||||||||||||||||| |||||||| || ||||||||    
T  10494337 tatttcggttaccctcacaatcacttctcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaat 10494238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 301
Target Start/End: Original strand, 8659468 - 8659740
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||||| ||||| |||||| || ||||||||||| | |   || |||||||| ||||||||||||||||| ||||| |||||||||||||  ||||    
T  8659468 aggtgagtgtttccagaagtggcttttacttcaaagacatcacccttcattgtaaggatagacacatcaaaagtaccaccaccaagatcaaagaccaaaa 8659567  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    |||||   |   || |||||| | ||||||| | ||  |||||||||| ||| || ||||| |||||||| |||||| | |||||||| || ||||||||    
T  8659568 tattttgtttaccatcacagtcacctctcttgtcaaaaccatatgcaatagctgcagcagtaggttcattaattatctgaatgacattaaggccagcaat 8659667  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttc 301  Q
      |||| | |||| | |||||| |||  || |||||||| || || ||||| || ||||  || |||||||||    
T  8659668 ggcaccggaatctatggtggcttttcgctgagaatcattgaactatgcaggcactgtaacaacagcattcttc 8659740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 48 - 300
Target Start/End: Original strand, 3147388 - 3147648
Alignment:
Q  48 tggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaatatttctctcttc------ 141  Q
    ||||||| |||| |||||||||||  ||||||||||||| ||||||||||||||| ||||| || |  ||||||||||||||||| | ||| ||          
T  3147388 tggccttaacttgaaagaccttatccttaattgtaagaagagacacatcaaaagtcccaccacccaagtcaaagataaaaatattacgctcctctacaca 3147487  T
Q  142 --aacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaatttcacctgcat 239  Q
       ||||| |||| |||||| |  || ||||| |||| ||| || ||||| |||||||||||||||||||| | ||| || ||||||||  |||| ||||    
T  3147488 attacacaattagttctcttgtccagtccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcat 3147587  T
Q  240 ctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
    || | || ||| | |  || | |||||| |||||||||||||| ||||  |||||||||||    
T  3147588 ctattgtcgctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattctt 3147648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 153 - 300
Target Start/End: Original strand, 8590867 - 8591014
Alignment:
Q  153 ctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaatttcacctgcatctttagtggctct 252  Q
    |||||||||||||||||||||||||  | || ||||| |||||||| ||||||||||| ||||| |  ||||||||  |||| |||||||| || ||| |    
T  8590867 ctctcttttgaaggccatatgcaaggccagcggcagttggttcattaattatccgcattacattcaagccagcaatgacaccagcatctttggtagcttt 8590966  T
Q  253 tcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
     |  || ||||||||||||||||| || |||||||  |||||||||||    
T  8590967 cctctgagaatcattaaaataagctggcacagtaacaactgcattctt 8591014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 300
Target Start/End: Complemental strand, 27830938 - 27830667
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||||| ||||||||| ||||| ||||  ||||||||||  |||||||||| || ||||||||||||||| ||||| ||||| ||||| | |||||    
T  27830938 aggtgagtgtttccagcagttgccttaacttggaagaccttatccttaattgtaacaagagacacatcaaaagtcccaccaccaaggtcaaacacaaaaa 27830839  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    |||| |  ||| ||  | | || | || | | | |||||||||||||| ||| || ||||| || ||  | ||||||||||| ||||| || ||||||||    
T  27830838 tattccgttctccagtatattttgttcccgtgtcaaggccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaat 27830739  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
      |||| | ||||  ||||||| ||| ||| || ||||| |||||||| || || || || |||||||||||    
T  27830738 ggcaccggaatctacagtggcttttcgttgagagtcattgaaataagctggcacggttattactgcattctt 27830667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 241
Target Start/End: Original strand, 8654552 - 8654767
Alignment:
Q  26 cctaggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataa 125  Q
    |||||||| |||| |||||||||||| || || |||||||| | |   |||||||| || ||||||||||||||||| ||||| ||||||||||| |  |    
T  8654552 cctaggtgcgtgtttccagcagtggcttttacgtcaaagacatcacccttaattgtgagtatagacacatcaaaagtaccaccaccaagatcaaatacca 8654651  T
Q  126 aaatatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagc 225  Q
    ||||||| |  |   || || |||||  || ||| | |||||||||||||| ||| || ||||| |||||||||| |||||| ||||| || || |||||    
T  8654652 aaatattccgtttaccatcatagttacttcgcttgtcaaggccatatgcaatagctgcggcagtaggttcattgagtatccgaatgacgttaagtccagc 8654751  T
Q  226 aatttcacctgcatct 241  Q
    |||  |||| ||||||    
T  8654752 aatggcaccagcatct 8654767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 8671568 - 8671494
Alignment:
Q  154 tctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    |||||| | |||||||||||||| ||| || ||||| ||||||||||||||||| |||||||| || ||||||||    
T  8671568 tctcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaagtccagcaat 8671494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 6786816 - 6786925
Alignment:
Q  89 gacacatcaaaagttccaccgccaagatcaaagataaaaatatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcag 188  Q
    |||| ||||||||||| ||  ||||||||||||||||| ||||| || | ||||||| | || |||||||| | |||  ||||||||||||| ||  |||    
T  6786816 gacatatcaaaagttctacaaccaagatcaaagataaatatattcctattttcaacaaaatttgctctcttataaagatcatatgcaagagcagcaacag 6786915  T
Q  189 tcggttcatt 198  Q
    | ||||||||    
T  6786916 taggttcatt 6786925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 1301616 - 1301668
Alignment:
Q  80 gtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaatatt 132  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||  ||||||||    
T  1301616 gtaaggatagacacatcaaaagtaccaccgccaaggtcaaagaccaaaatatt 1301668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 8590797 - 8590837
Alignment:
Q  83 agaatagacacatcaaaagttccaccgccaagatcaaagat 123  Q
    |||| ||||||||||||||| ||||| ||||||||||||||    
T  8590797 agaagagacacatcaaaagtgccaccaccaagatcaaagat 8590837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 228
Target Start/End: Original strand, 39985814 - 39985950
Alignment:
Q  92 acatcaaaagttccaccgccaagatcaaagataaaaatatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcg 191  Q
    ||||||||||| ||||| ||||| |||||||| || | |||  ||||| |||||| | | ||| |||| | ||| ||||| ||||  || || ||||| |    
T  39985814 acatcaaaagtaccaccaccaaggtcaaagatcaagacattcttctctccaacactggttgctttcttgtcaagaccataagcaatggcagcagcagtgg 39985913  T
Q  192 gttcattgattatccgcatgacatttagaccagcaat 228  Q
    | |||||||| || ||||||||||| ||||| |||||    
T  39985914 gctcattgataattcgcatgacattaagaccggcaat 39985950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 29 - 300
Target Start/End: Original strand, 12528609 - 12528880
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||||||||| ||||||||||||||||| ||||| ||||| || | |||||||| ||||||||||||||||||||||||||| ||||| |||||||    
T  12528609 aggtgagtgtctccggcagtggccttgacttcgaagacattattctttactgtaagaagagacacatcaaaagttccaccgccaaggtcaaaaataaaaa 12528708  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    |  |||||||||||| ||| |||||||||||||||| ||||||||||||||| || ||||| ||||| ||||||||||| || ||||| || ||||||||    
T  12528709 tccttctctcttcaagacaattagctctcttttgaatgccatatgcaagagcagctgcagttggttcgttgattatccgtattacattgaggccagcaat 12528808  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
      |||| ||||| || ||||||| ||  || |||||||| ||||| || || || |||||||||||||||||    
T  12528809 gacaccagcatccttggtggctcgtcgctgcgaatcattgaaatacgctggcaccgtaatcactgcattctt 12528880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 300
Target Start/End: Original strand, 43744990 - 43745223
Alignment:
Q  65 accttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaatatttctctcttcaacacagttagctctcttttgaa 164  Q
    |||||||  ||||||||||| | ||||||||||||||| ||||| || || |||||||| |||||||||||  ||   ||| |||||| ||||||||  |    
T  43744990 accttatccttaattgtaaggagagacacatcaaaagtcccaccacccaggtcaaagatgaaaatatttcttcctcgcacagagttagttctcttttcca 43745089  T
Q  165 ggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatc 264  Q
    | |||||||||| ||| || ||||| |||||||||||||||  ||| ||||  || ||||||||  |||| |||||  |||||||| | |  ||  ||||    
T  43745090 gaccatatgcaatagctgcagcagtgggttcattgattatcttcataacatcaagcccagcaatggcaccagcatc--tagtggctttccgctgataatc 43745187  T
Q  265 attaaaataagcaggtacagtaatcactgcattctt 300  Q
    ||| |||||||| || |||||||  |||||||||||    
T  43745188 attgaaataagccggcacagtaacaactgcattctt 43745223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 31 - 287
Target Start/End: Original strand, 11999501 - 11999757
Alignment:
Q  31 gtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaata 130  Q
    |||||||| |||||| |||||||| ||||  ||||| || |  |||||||| || ||||||| ||||||||| |||||||||||||||||||  |||||     
T  11999501 gtgagtgtttccagctgtggccttaacttggaagacattgtccttaattgttagtatagacaaatcaaaagtgccaccgccaagatcaaagactaaaatg 11999600  T
Q  131 tttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaattt 230  Q
    ||||| ||| ||||||| | ||||||||| | |||||||||||||| ||  || ||||| |||||||| |||| ||  || ||||| |  |||||||||     
T  11999601 tttctttctccaacacaatcagctctcttgtcaaggccatatgcaacagttgcagcagtgggttcattcattacccttataacattgatgccagcaattg 11999700  T
Q  231 cacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaa 287  Q
    |||| |||||| |||||||| ||| ||| |||||| |||||||||| ||||||||||    
T  11999701 caccggcatctatagtggcttttcgttgagaatcactaaaataagctggtacagtaa 11999757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 29 - 300
Target Start/End: Complemental strand, 12245469 - 12245198
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||||| ||||||||||||||| ||||  ||||  ||||  ||||| || || ||||| || |||||||| ||||| ||||||||||| | |||||    
T  12245469 aggtgagtgtttccagcagtggccttaacttggaagatgttatccttaatagttaggatagaaacgtcaaaagtgccaccaccaagatcaaacacaaaaa 12245370  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    | ||||| ||| ||||||| | ||||||||||| |||||||||||||| ||| || ||||| |||||||| |||| || ||| ||||| |||||||||||    
T  12245369 tgtttctttctccaacacaatcagctctcttttcaaggccatatgcaacagctgcagcagtgggttcattcattaccctcataacattgagaccagcaat 12245270  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
    |   || |||||| | || ||| |||  || |||||| |||||||||||||||||||||  || ||||||||    
T  12245269 tgagccagcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattctt 12245198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 88 - 298
Target Start/End: Original strand, 7542390 - 7542600
Alignment:
Q  88 agacacatcaaaagttccaccgccaagatcaaagataaaaatatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgca 187  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||||| |||| || || | | || |||||| | |||||||||||||| ||| || |||    
T  7542390 agacacatcaaaagtgccaccgccaagatcaaaaacaaaaatatttcgctctccatcataatcagttctcttgtcaaggccatatgcaacagctgcggca 7542489  T
Q  188 gtcggttcattgattatccgcatgacatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaa 287  Q
    || |||||||| |||  || ||| ||||| || ||||||||  |||| |||||| |||||||| ||| ||| ||||||||||||||||||||||||||||    
T  7542490 gtaggttcattcattgccctcataacattgaggccagcaatggcacccgcatctatagtggcttttcgttgagaatcattaaaataagcaggtacagtaa 7542589  T
Q  288 tcactgcattc 298  Q
      |||||||||    
T  7542590 caactgcattc 7542600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 285
Target Start/End: Complemental strand, 16662055 - 16661799
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||||| ||||| |||||| || ||||||||||| | |  ||||||||| || | ||||||||||||||| ||||| ||||||||||||| |||||    
T  16662055 aggtgagtgtttccagaagtggctttaacttcaaagacatcacctttaattgtgaggagagacacatcaaaagtcccaccaccaagatcaaagacaaaaa 16661956  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    ||||||| ||  || |||| |||  ||| || | |||||||||||||| ||| || ||||| |||||||||||||||| ||  || || || ||||||||    
T  16661955 tatttctttcaccatcacaattacttcttttgtcaaggccatatgcaatagctgctgcagtgggttcattgattatcctcacaacgttaaggccagcaat 16661856  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagt 285  Q
      |||| |||||  | |||||| |||  || ||||| |||||||||||||| |||||    
T  16661855 ggcaccagcatccatggtggcttttcgctgagaatcgttaaaataagcaggaacagt 16661799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 29 - 300
Target Start/End: Complemental strand, 12258644 - 12258373
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    ||||| |||| |||||| || ||||| |||| |||||| ||||  ||||| || || | ||||||||||||||| ||||| ||||||||||||| |||||    
T  12258644 aggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaagacaaaaa 12258545  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    |||| |  | ||| ||||| |||  ||| || | |||||||||||||| ||| || ||||| |||||||| | ||||  ||| ||||| || ||| ||||    
T  12258544 tattccgtttttcgacacaattaattcttttgtcaaggccatatgcaaaagctgcagcagtaggttcatttaatatcttcataacattcaggccaacaat 12258445  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
     | |||  ||||| |||||||| | | |||||||||| ||||||| ||||| |||||||  |||||||||||    
T  12258444 attacccacatctatagtggctttcctttgtgaatcactaaaatatgcaggcacagtaacaactgcattctt 12258373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 300
Target Start/End: Original strand, 12234794 - 12235065
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||||| ||| || ||||| || ||||  ||||| |||  ||| ||||| || | ||||||||||||||| |||||||| |||||||| | |||||    
T  12234794 aggtgagtgtttccggctgtggctttaacttggaagacattacctttgattgttaggagagacacatcaaaagtgccaccgccgagatcaaaaacaaaaa 12234893  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    ||||||  ||| ||||||| | || |||||| | ||| |||||||||| ||| || ||  | ||||| || |||| || ||| ||||| || ||||||||    
T  12234894 tatttcgttctccaacacaatcagttctcttgtcaagaccatatgcaacagcggctgccatgggttcgttcattaccctcataacattgaggccagcaat 12234993  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
      |||| |||||| |||| ||| ||| ||| |||||||| ||||||||||| || ||||  |||||||||||    
T  12234994 gacaccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattctt 12235065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 43625517 - 43625691
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||||| |||||||||||| || ||    |||||||| |  ||||||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||    
T  43625517 aggtgagtgtttccagcagtggctttaacacggaagaccttgtccttaattgtaagtatagacacatcaaaagtaccaccaccaaggtcaaagatgaaaa 43625616  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgatta 203  Q
    ||||||  ||| ||||||| |||  |||||| | |||||| ||||| ||||| || || || |||||||||||||    
T  43625617 tatttcgttctccaacacaattaattctcttgttaaggccgtatgctagagcagcagctgttggttcattgatta 43625691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 300
Target Start/End: Complemental strand, 16657580 - 16657309
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||||| ||| |||||||| || || ||||| || | |   ||||||||||| ||||||||||||||||| ||||||||||| ||||||| |||||    
T  16657580 aggtgagtgtttccggcagtggcttttacctcaaaaacatcacccttaattgtaaggatagacacatcaaaagtaccaccgccaaggtcaaagacaaaaa 16657481  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    |||| |  |   || |||| | |  |||||| | ||| |||||||||| ||| || ||||| ||||||||||| || || |||||||| || ||||| ||    
T  16657480 tattccgtttaccatcacaatcacttctcttgtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgat 16657381  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
      |||| |||||| | |||||| |||  || |||||||| || ||||| || |||||||  || ||||||||    
T  16657380 ggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 16657309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 300
Target Start/End: Original strand, 14703558 - 14703784
Alignment:
Q  74 ttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaatatttctctcttcaacacagttagctctcttttgaaggccatatg 173  Q
    |||||||| || | |||||| |||||||| ||||| ||||||||||||| ||| ||||| |  ||| || || | | || |||||| | |||||||||||    
T  14703558 ttaattgttaggagagacacgtcaaaagtaccaccaccaagatcaaagacaaatatattacgttctccaccataatcagttctcttgtcaaggccatatg 14703657  T
Q  174 caagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaata 273  Q
    ||| ||| || || || |||||||| |||| || ||| ||||| || || |||||  |||| |||||  |||||||| ||| ||| |||||| |||||||    
T  14703658 caatagctgcagctgtaggttcattcattaccctcataacattgaggccggcaataacaccagcatccatagtggcttttctttgagaatcactaaaata 14703757  T
Q  274 agcaggtacagtaatcactgcattctt 300  Q
    |||||| || ||||  |||||||||||    
T  14703758 agcaggcaccgtaacaactgcattctt 14703784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 300
Target Start/End: Complemental strand, 34466856 - 34466585
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    ||||||||||  |||| ||||||||| ||||||||||| ||||  ||||||||||| | ||||||||||||||| ||||| ||||| |||||||  ||||    
T  34466856 aggtgagtgttaccagaagtggccttaacttcaaagacattatccttaattgtaaggagagacacatcaaaagtcccaccaccaaggtcaaagacgaaaa 34466757  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    ||||||  ||||| ||| ||| ||||||||| | ||| |||||||||| ||| || ||||| ||||||||||||||  |||  ||||| || ||||||||    
T  34466756 tatttccttcttccacaaagtcagctctcttgtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaat 34466657  T
Q  229 ttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
       ||| |||||   ||| ||| |||  || |||||||||||||||||||| || || || |||||||||||    
T  34466656 agtaccagcatccacagtagcttttcgctgagaatcattaaaataagcaggcacggtgataactgcattctt 34466585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 297
Target Start/End: Original strand, 15595139 - 15595414
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||||| |||  | |||||||| ||||  |||||||| |  |||||||| || ||||||||||||||||| ||||| ||||||||||||| |||||    
T  15595139 aggtgagtgtttccgcctgtggccttaacttggaagaccttgtccttaattgttaggatagacacatcaaaagtgccaccaccaagatcaaagacaaaaa 15595238  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccg-------ccgcagtcggttcattgattatccgcatgacatttagac 221  Q
    ||||||| ||| |||||||||||   ||||| | |||||||||||||| ||| |       | || |||||||||||||||| ||| || ||||| || |    
T  15595239 tatttctttctccaacacagttaatcctcttgtcaaggccatatgcaatagctgcagctgtcagctgtcggttcattgattacccgtataacattaaggc 15595338  T
Q  222 cagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcatt 297  Q
    |||||||  ||||||||||| |||||||| ||| ||| |||||||| | ||||||||| || ||||  ||||||||    
T  15595339 cagcaatggcacctgcatctatagtggcttttcgttgagaatcattgagataagcaggcacggtaacaactgcatt 15595414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 4678624 - 4678516
Alignment:
Q  26 cctaggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataa 125  Q
    ||||||||||||| |||||||||||| || |||||||||||   |   || ||| |||| ||||||||||||||||| ||||| ||||| ||||||| ||    
T  4678624 cctaggtgagtgtttccagcagtggcttttacttcaaagacaccacccttgattttaaggatagacacatcaaaagtaccaccaccaaggtcaaagacaa 4678525  T
Q  126 aaatatttc 134  Q
    | |||||||    
T  4678524 atatatttc 4678516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 297
Target Start/End: Original strand, 30775359 - 30775625
Alignment:
Q  31 gtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaata 130  Q
    |||||||| ||||||||| || || |||||||| || | || | |||| || |||| ||||||||||||||| ||||| ||||||||||||| |||||||    
T  30775359 gtgagtgtttccagcagttgctttaacttcaaacacatcatctctaatggtgagaagagacacatcaaaagtcccaccaccaagatcaaagacaaaaata 30775458  T
Q  131 tttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaattt 230  Q
    || |||||  || ||||  || ||||||| | ||| |||||||||| ||| || ||||| || ||||| ||||| | ||| ||||| |||||||||||      
T  30775459 ttcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatgg 30775558  T
Q  231 cacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcatt 297  Q
    |||| |||||  |||||||| |||  |||| |||||| ||||||||||| ||||| || ||||||||    
T  30775559 caccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcacagtgataactgcatt 30775625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 300
Target Start/End: Original strand, 35132556 - 35132824
Alignment:
Q  32 tgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaatat 131  Q
    ||||||| ||| ||||||||||| ||||  ||||| ||||  ||||| ||||| || || ||||||||||| ||||| |||||||| |||| ||||||||    
T  35132556 tgagtgtttccggcagtggccttaacttggaagacattatccttaatagtaagtattgaaacatcaaaagtgccaccaccaagatcgaagacaaaaatat 35132655  T
Q  132 ttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaatttc 231  Q
    ||   ||| || |||| | || |||||| | ||||||||||||||  || || ||||| |||||||| ||||  | ||| |||||  ||||||||||  |    
T  35132656 tttgttctccagcacaatcagatctcttgtcaaggccatatgcaaccgctgcggcagtaggttcattcattactctcataacattgggaccagcaatagc 35132755  T
Q  232 acctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattctt 300  Q
    ||| |||||| |||||||| ||| ||| |||||| ||||||||||||| |||||||  |||||||||||    
T  35132756 accagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattctt 35132824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 228
Target Start/End: Complemental strand, 9335909 - 9335755
Alignment:
Q  74 ttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaatatttctctcttcaacacagttagctctcttttgaaggccatatg 173  Q
    |||||||| || ||||||||||||||||| || || || |||||||||| |||||||||||  |   || |||||| |  |||||| | |||||||||||    
T  9335909 ttaattgtgaggatagacacatcaaaagtaccgccacccagatcaaagacaaaaatatttcggttaccatcacagtcatttctcttatcaaggccatatg 9335810  T
Q  174 caagagccgccgcagtcggttcattgattatccgcatgacatttagaccagcaat 228  Q
    ||| ||| || ||||| ||||||||||||||||| |||||||| || ||||||||    
T  9335809 caatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaat 9335755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 300
Target Start/End: Original strand, 28220115 - 28220327
Alignment:
Q  88 agacacatcaaaagttccaccgccaagatcaaagataaaaatatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgca 187  Q
    ||||||||||||||| ||||| || || |||||||| ||||||||||  ||| | |  ||||||| ||| || |  |  |||||||||| ||| || |||    
T  28220115 agacacatcaaaagtcccaccacccaggtcaaagatgaaaatatttcgttctcccatgcagttagttcttttgtccaatccatatgcaatagcagcagca 28220214  T
Q  188 gtcggttcattgattatccgcatgacatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaa 287  Q
    || |||||||||| |||||  |  |||||||||||||||||   |||||||||| | |||||| | |  ||  ||||||| ||||||||||| |||||||    
T  28220215 gtgggttcattgactatccttagaacatttagaccagcaatggtacctgcatctatggtggctttccgctgataatcattgaaataagcaggcacagtaa 28220314  T
Q  288 tcactgcattctt 300  Q
    | |||||||||||    
T  28220315 taactgcattctt 28220327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 28910687 - 28910874
Alignment:
Q  29 aggtgagtgtctccagcagtggccttgacttcaaagaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaagatcaaagataaaaa 128  Q
    |||||||||| |||||| |||||||| ||||  ||||||||||  | ||||||||| | ||| ||||||||||| ||||  || || || ||||| |||     
T  28910687 aggtgagtgtttccagcggtggccttaacttggaagaccttatcctgaattgtaaggagagaaacatcaaaagtcccactacccaggtcgaagatgaaag 28910786  T
Q  129 tatttctctcttcaacacagttagctctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatt 216  Q
    ||||||  ||| || |||| | ||||||||| |  |||||||||| || |||  | |||||  | ||||||||||||||||| |||||    
T  28910787 tatttcgttctccagcacactcagctctcttgtcgaggccatatgaaatagctacagcagtgagctcattgattatccgcataacatt 28910874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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