View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_high_43 (Length: 306)
Name: NF12943_high_43
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 42201446 - 42201714
Alignment:
| Q |
18 |
ggacaaaggaagaatacgaatactattgggatcagcaattggaggtttaaccaatttaaccactaatattcagaatcatgttcaaaagggagttaagaaa |
117 |
Q |
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| T |
42201446 |
ggacaaaggaagaataggaatactatagggatcagcaattggaggtttaaccaatttaaccactaatattcagaatcatgttcaaaagggagttaagaaa |
42201545 |
T |
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| Q |
118 |
gtttctccattggccattccatataccatcaccaacatgggtggtgctttgctggctatagaaactggcctaatgggaccaaattattccatttctactg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42201546 |
gtttctccattggccattccatataccatcaccaacatgggtggtgctttgctggctatagaaactggcctaatgggaccaaattattccatttctactg |
42201645 |
T |
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| Q |
218 |
cttgttcaacagcaaattattgcttttgtgctgcttctaatcacattagaaggggtgaagtagatatta |
286 |
Q |
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| T |
42201646 |
cttgttcaacagcaaattattgcttttgtgctgcttctaaccacattagaaggggtgaagtagatatta |
42201714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 170 - 286
Target Start/End: Original strand, 42186080 - 42186196
Alignment:
| Q |
170 |
tggctatagaaactggcctaatgggaccaaattattccatttctactgcttgttcaacagcaaattattgcttttgtgctgcttctaatcacattagaag |
269 |
Q |
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| T |
42186080 |
tggctatagaaactggcctaatgggaccaaattattccatttctactgcttgtgcaacagcaaattactgcttttgtgcagcttctcatcacattagaag |
42186179 |
T |
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| Q |
270 |
gggtgaagtagatatta |
286 |
Q |
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| T |
42186180 |
tggtgaagtagatatta |
42186196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 170 - 286
Target Start/End: Original strand, 42195761 - 42195878
Alignment:
| Q |
170 |
tggctatagaaactggcctaatgggaccaaattattccatttctactgcttgttcaacagcaaattattgcttttgtgctgcttctaatcacattagaa- |
268 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
42195761 |
tggctatagaaactggtctaatgggaccaaattattccatttctactgcttgtgcaacagcaaattactgcttttatgctgcttctaatcacattagaag |
42195860 |
T |
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| Q |
269 |
ggggtgaagtagatatta |
286 |
Q |
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| T |
42195861 |
ggggtgaagtagatatta |
42195878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 46611400 - 46611326
Alignment:
| Q |
190 |
atgggaccaaattattccatttctactgcttgttcaacagcaaattattgcttttgtgctgcttctaatcacatt |
264 |
Q |
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| T |
46611400 |
atgggtccaaattattctatttctactgcttgtgctacttcaaattattgtttttatgctgctgccaatcacatt |
46611326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 38472091 - 38472172
Alignment:
| Q |
196 |
ccaaattattccatttctactgcttgttcaacagcaaattattgcttttgtgctgcttctaatcacattagaaggggtgaag |
277 |
Q |
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| T |
38472091 |
ccaaattattctatttcaactgcttgtgctacttcaaattattgctttgttgctgctgccaatcacattcgtaggggtgaag |
38472172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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