View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12943_high_46 (Length: 301)

Name: NF12943_high_46
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12943_high_46
NF12943_high_46
[»] chr7 (1 HSPs)
chr7 (1-291)||(46785224-46785514)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 46785514 - 46785224
Alignment:
Q  1 tggaggaattacttaacaggtaacattaacagcgttactcatcctacaaannnnnnnnacctggtggggtgtggaatagtttatcaaattaatccctttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  46785514 tggaggaattacttaacaggtaacattaacagcgttactcatcctacaatttttttttacctggtggggtgtggaatagtttatcaaattaatccctttg 46785415  T
Q  101 tcaacttattatctttcttataaaactaaaagatgcaatacaatcatatactagcatgcttttttacttaatcatataacatattattaccttttggaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46785414 tcaacttattatctttcttataaaactaaaagatgcaatacaatcatatactagcatgcttttttacttaatcatataacatattattaccttttggaat 46785315  T
Q  201 catacaatgtttttagagtttaataagttcattccatttgatttcttatttcctttttgttgatgttgcagtataatagatgcaccctatg 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46785314 catacaatgtttttagagtttaataagttcattccatttgatttcttatttccttcttgttgatgttgcagtataatagatgcaccctatg 46785224  T

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