View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12943_high_47 (Length: 301)

Name: NF12943_high_47
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12943_high_47
NF12943_high_47
[»] chr6 (7 HSPs)
chr6 (19-170)||(17171570-17171719)
chr6 (175-280)||(30045449-30045554)
chr6 (175-277)||(32729554-32729656)
chr6 (175-276)||(1701897-1701998)
chr6 (174-268)||(1702184-1702278)
chr6 (175-212)||(35033362-35033399)
chr6 (232-280)||(4140135-4140183)
[»] chr8 (9 HSPs)
chr8 (175-276)||(34373613-34373714)
chr8 (178-277)||(34373908-34374007)
chr8 (178-278)||(21008434-21008534)
chr8 (179-265)||(15937837-15937923)
chr8 (175-257)||(21397240-21397322)
chr8 (175-257)||(21791733-21791815)
chr8 (175-259)||(34074294-34074378)
chr8 (175-270)||(24196134-24196229)
chr8 (175-212)||(22576689-22576726)
[»] chr2 (17 HSPs)
chr2 (175-280)||(26533281-26533386)
chr2 (177-280)||(26533579-26533683)
chr2 (175-266)||(38144017-38144108)
chr2 (185-280)||(31074227-31074322)
chr2 (175-274)||(44279304-44279403)
chr2 (226-280)||(8596476-8596530)
chr2 (175-280)||(21089078-21089183)
chr2 (217-277)||(28163241-28163301)
chr2 (175-212)||(27187497-27187534)
chr2 (175-212)||(27837311-27837348)
chr2 (236-280)||(14913577-14913621)
chr2 (175-257)||(27187228-27187310)
chr2 (175-257)||(27836770-27836852)
chr2 (175-257)||(27837042-27837124)
chr2 (226-274)||(44279058-44279107)
chr2 (175-211)||(27187002-27187038)
chr2 (175-211)||(27836544-27836580)
[»] scaffold0251 (1 HSPs)
scaffold0251 (175-280)||(12603-12708)
[»] scaffold0007 (1 HSPs)
scaffold0007 (175-280)||(262123-262228)
[»] chr5 (8 HSPs)
chr5 (175-280)||(36975240-36975345)
chr5 (175-280)||(36975929-36976034)
chr5 (175-280)||(10567342-10567447)
chr5 (178-280)||(15173468-15173570)
chr5 (178-280)||(22586978-22587080)
chr5 (175-264)||(16253757-16253846)
chr5 (199-277)||(39569932-39570010)
chr5 (175-263)||(22599091-22599179)
[»] chr1 (11 HSPs)
chr1 (175-280)||(32024953-32025058)
chr1 (175-280)||(32025249-32025354)
chr1 (175-280)||(32025545-32025650)
chr1 (175-277)||(31412408-31412510)
chr1 (175-268)||(9448648-9448741)
chr1 (178-280)||(4662942-4663045)
chr1 (175-268)||(4119118-4119211)
chr1 (175-280)||(51865811-51865915)
chr1 (226-277)||(34228447-34228498)
chr1 (226-280)||(34228200-34228254)
chr1 (175-259)||(50013661-50013745)
[»] chr4 (7 HSPs)
chr4 (175-277)||(19987942-19988044)
chr4 (190-280)||(7833767-7833857)
chr4 (175-277)||(19987648-19987750)
chr4 (175-280)||(8107426-8107531)
chr4 (175-264)||(38978716-38978805)
chr4 (175-280)||(11028758-11028862)
chr4 (232-280)||(18936184-18936232)
[»] chr7 (13 HSPs)
chr7 (175-280)||(8356223-8356328)
chr7 (175-275)||(3958364-3958464)
chr7 (175-264)||(17944568-17944657)
chr7 (175-280)||(23071747-23071852)
chr7 (175-280)||(13789509-13789614)
chr7 (178-268)||(25193994-25194084)
chr7 (175-280)||(23072053-23072158)
chr7 (176-280)||(37223838-37223942)
chr7 (175-268)||(3958077-3958169)
chr7 (181-273)||(2196756-2196848)
chr7 (175-242)||(23072349-23072416)
chr7 (239-275)||(7406897-7406933)
chr7 (226-278)||(25194476-25194528)
[»] chr3 (3 HSPs)
chr3 (175-280)||(3870781-3870886)
chr3 (226-280)||(7407878-7407932)
chr3 (175-256)||(19997100-19997181)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 17171719 - 17171570
Alignment:
Q  19 aaccatccaaatgcgaaaaagaaggtggcaaccttcgtattgaatgcaaccaaccccgttgtaaaatcgtatgctcagaagtatatcctcgtaatcagac 118  Q
    |||||||||||||||| |||||||| || |||||||||||| ||||||||| ||| || ||||| || ||||||||||||||||  |||| |||||||||    
T  17171719 aaccatccaaatgcgacaaagaaggcggtaaccttcgtattaaatgcaacctacctcgctgtaagatggtatgctcagaagtat--cctcataatcagac 17171622  T
Q  119 gtcattttcttcatctctctatgcaatgcatcaataatataattgagaatct 170  Q
     |||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  17171621 ctcattttcttcatctctctacgcaatgcatcaataatttaattgagaatct 17171570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 30045449 - 30045554
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  30045449 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctca 30045548  T
Q  275 tgggct 280  Q
    ||||||    
T  30045549 tgggct 30045554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 277
Target Start/End: Original strand, 32729554 - 32729656
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||| |||||||||||||| ||| ||||||||||  |  ||||||| ||| ||||||||||||| ||||||||||||||| ||||||||| |||||    
T  32729554 taggagtctcacatcgagtagatcaaactgcttgatgtgatacttaagtcatgaagttctcccacctattggactagtcttttgagttgggctctcctca 32729653  T
Q  275 tgg 277  Q
    |||    
T  32729654 tgg 32729656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 276
Target Start/End: Complemental strand, 1701998 - 1701897
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||| |||||||||||||| ||| | |||||||| ||  ||||| |  ||||||||||||| || |||||||||||||| |||||| ||| |||||    
T  1701998 taggagtctcacatcgagtagatcaaaatacttgatgtggtacttaagccaagaggttctcccacttattggactagtcttttaggttggcctctcctca 1701899  T
Q  275 tg 276  Q
    ||    
T  1701898 tg 1701897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 268
Target Start/End: Complemental strand, 1702278 - 1702184
Alignment:
Q  174 ataggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctc 268  Q
    |||| ||||||||||||||||||| ||| || ||||||| ||  ||||| | ||||||||||| | ||| |||| | ||||||||||||||||||    
T  1702278 atagaagtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgaggttctcctatctattggattggtcttttgggttgggctc 1702184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 35033362 - 35033399
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgt 212  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  35033362 taggagtctcacattgagtagattaaagtgcttgatgt 35033399  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 4140135 - 4140183
Alignment:
Q  232 tctcccacctaatggactagtcttttgggttgggctcacctcatgggct 280  Q
    |||||||| ||||| |||||||||||||||||| ||| | |||||||||    
T  4140135 tctcccacgtaatgaactagtcttttgggttggactctcttcatgggct 4140183  T

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Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 175 - 276
Target Start/End: Complemental strand, 34373714 - 34373613
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    ||||| || ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  34373714 taggactctcacatcgagtagattaaagtgcttgatgtagtacttaagtcgtgaggttctcccacctattggactagtcttttggattgggctctcctca 34373615  T
Q  275 tg 276  Q
    ||    
T  34373614 tg 34373613  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 178 - 277
Target Start/End: Complemental strand, 34374007 - 34373908
Alignment:
Q  178 gagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgg 277  Q
    ||||| || |||||||||||||||||||||||||| ||  ||||| ||||||||||||| || || ||||||||||||||| |||||||||  |||||||    
T  34374007 gagtctcatatcgagtagattaaagtgcttgatgtggtacttaagccgtgaggttctcctacatattggactagtcttttgcgttgggctcttctcatgg 34373908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 21008534 - 21008434
Alignment:
Q  178 gagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgg 277  Q
    ||||||||||||||||| || |||||| ||| ||| ||  ||||||   |||| || ||||||||||||||| |||||||||||||||||| ||||||||    
T  21008534 gagtcccacatcgagtacataaaagtgtttgttgtggtacttaagttacgaggctcccccacctaatggacttgtcttttgggttgggctctcctcatgg 21008435  T
Q  278 g 278  Q
    |    
T  21008434 g 21008434  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 15937923 - 15937837
Alignment:
Q  179 agtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttggg 265  Q
    |||||||||||| ||| || ||| |||||||||| ||  ||||| | ||||  ||||||||||||||||||||||||||||||||||    
T  15937923 agtcccacatcgggtatataaaattgcttgatgtggtacttaagccatgagtctctcccacctaatggactagtcttttgggttggg 15937837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 21397240 - 21397322
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtctttt 257  Q
    |||||||||||| |||||||||| |||||| ||||||| || |||||  |  | || ||||||||||||||||||||||||||    
T  21397240 taggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaatggactagtctttt 21397322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 21791733 - 21791815
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtctttt 257  Q
    |||||||||||| |||||||||| |||||| ||||||| || |||||  |  | || ||||||||||||||||||||||||||    
T  21791733 taggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaatggactagtctttt 21791815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 34074294 - 34074378
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgg 259  Q
    ||||| || |||||||||||||| ||| | ||||||||  |  ||||| | ||||| ||||||||||| ||||||||||||||||    
T  34074294 taggattctcacatcgagtagatcaaaatacttgatgtgatacttaaggcatgaggctctcccacctattggactagtcttttgg 34074378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 24196229 - 24196134
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcac 270  Q
    ||||||| ||||||||| ||||| |||||  | || || ||| |||||   ||||| || ||||||||||||| |||| |||||||||||||||||    
T  24196229 taggagttccacatcgattagataaaagttatcgacgtggtgcttaagctatgaggctcccccacctaatggattagtattttgggttgggctcac 24196134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 22576726 - 22576689
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgt 212  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  22576726 taggagtcccacatcgagtagataaaaatgcttgatgt 22576689  T

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Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 26533281 - 26533386
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    ||||||||||||||||||||||| |||||||||||||| ||  ||||  | ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26533281 taggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaaaccatgaggttctcccacctaatggactagtcttttgggttgggctctcctca 26533380  T
Q  275 tgggct 280  Q
    ||||||    
T  26533381 tgggct 26533386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 26533579 - 26533683
Alignment:
Q  177 ggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcg-tgaggttctcccacctaatggactagtcttttgggttgggctcacctcat 275  Q
    ||||||||||||||||||||| |||||||||||||| ||  ||||  |  ||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  26533579 ggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaaaaccatgaggttctcccacctattggactagtcttttgggttgggctctcctcat 26533678  T
Q  276 gggct 280  Q
    |||||    
T  26533679 gggct 26533683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 266
Target Start/End: Original strand, 38144017 - 38144108
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggc 266  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| |||||||||||||    
T  38144017 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggc 38144108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 280
Target Start/End: Original strand, 31074227 - 31074322
Alignment:
Q  185 acatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgggct 280  Q
    ||||||||||||| |||||  ||||||| ||  ||||| | ||||||||||  | ||| ||||||||||||||||||||||||| |||||||||||    
T  31074227 acatcgagtagatcaaagtatttgatgtggtacttaagccatgaggttctcatatctattggactagtcttttgggttgggctctcctcatgggct 31074322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 44279304 - 44279403
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    ||||||||||||||| ||||||| |||||| ||||||  ||  ||||  | ||||||||||||||||| | ||||| ||||||||||||||||| |||||    
T  44279304 taggagtcccacatcaagtagatcaaagtgtttgatgcggtacttaaaccttgaggttctcccacctattagactaatcttttgggttgggctctcctca 44279403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 8596530 - 8596476
Alignment:
Q  226 tgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgggct 280  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| |||| ||||||    
T  8596530 tgaggttctcccacctattggactagttttttgggttgggctctcctcgtgggct 8596476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 21089078 - 21089183
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||||||||||||||| || | |||| || |||| || |||||  | | ||| ||| | |||||||||| |||||||||||||||||||| | |||    
T  21089078 taggagtcccacatcgagtaaataagagtgttttatgtggtatttaaaccatcaggctctgcgacctaatggattagtcttttgggttgggctctcttca 21089177  T
Q  275 tgggct 280  Q
    ||||||    
T  21089178 tgggct 21089183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 28163241 - 28163301
Alignment:
Q  217 tttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgg 277  Q
    |||||| |||||||||||||||| |||||||||||| |||||||||| |||| || |||||    
T  28163241 tttaagccgtgaggttctcccacttaatggactagtattttgggttgagctctccacatgg 28163301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 27187534 - 27187497
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgt 212  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  27187534 taggagtcccacatcgagtagatcaaagtgcttgatgt 27187497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 27837348 - 27837311
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgt 212  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  27837348 taggagtcccacatcgagtagatcaaagtgcttgatgt 27837311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 14913621 - 14913577
Alignment:
Q  236 ccacctaatggactagtcttttgggttgggctcacctcatgggct 280  Q
    |||||||||||||||||||||| |||||||||| |||||| ||||    
T  14913621 ccacctaatggactagtcttttcggttgggctcccctcataggct 14913577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 257
Target Start/End: Complemental strand, 27187310 - 27187228
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtctttt 257  Q
    |||||||| |||||||||||||| ||| | ||||||||  |  ||||||| ||||||| || |||||| |||| |||||||||    
T  27187310 taggagtctcacatcgagtagatcaaactacttgatgtgatacttaagtcatgaggttttctcacctattggagtagtctttt 27187228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 257
Target Start/End: Complemental strand, 27836852 - 27836770
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtctttt 257  Q
    |||||||| |||||||||||||| ||| | ||||||||  |  ||||||| ||||||| || |||||| |||| |||||||||    
T  27836852 taggagtctcacatcgagtagatcaaactacttgatgtgatacttaagtcatgaggttttctcacctattggagtagtctttt 27836770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 257
Target Start/End: Complemental strand, 27837124 - 27837042
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtctttt 257  Q
    |||||||| |||||||||||||| ||| | ||||||||  |  ||||||| ||||||| || |||||| |||| |||||||||    
T  27837124 taggagtctcacatcgagtagatcaaactacttgatgtgatacttaagtcatgaggttttctcacctattggagtagtctttt 27837042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 44279058 - 44279107
Alignment:
Q  226 tgaggttctcccacctaatggactagtc-ttttgggttgggctcacctca 274  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| |||||    
T  44279058 tgaggttctcccacctattggagtagtctttttgggttgggctctcctca 44279107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 27187038 - 27187002
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatg 211  Q
    |||||||| |||||||||||||| |||||||||||||    
T  27187038 taggagtctcacatcgagtagatcaaagtgcttgatg 27187002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 27836580 - 27836544
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatg 211  Q
    |||||||| |||||||||||||| |||||||||||||    
T  27836580 taggagtctcacatcgagtagatcaaagtgcttgatg 27836544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 12603 - 12708
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    ||||||||||||||||||||||| ||||||||||||||  |  ||||| | ||||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  12603 taggagtcccacatcgagtagatcaaagtgcttgatgtgttacttaagccatgaggttcttccacctattggactagtcttttgggttgggctctcctca 12702  T
Q  275 tgggct 280  Q
    ||||||    
T  12703 tgggct 12708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 262123 - 262228
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  262123 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctca 262222  T
Q  275 tgggct 280  Q
    ||||||    
T  262223 tgggct 262228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 36975240 - 36975345
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||| | ||| ||||||| ||| || |||||||||||||||||||||| | |||    
T  36975240 taggagtcccacatcgagtagattaaagtgtttgatgtagtatttaagtcataaggctctcccatctattgaactagtcttttgggttgggctctcttca 36975339  T
Q  275 tgggct 280  Q
    ||||||    
T  36975340 tgggct 36975345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 36975929 - 36976034
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    ||||||||||||||||||||||| |||||| ||||||| || |||||||| | ||| ||||||||||  ||||||||||||||||||| ||||| |||||    
T  36975929 taggagtcccacatcgagtagatcaaagtgtttgatgtggtatttaagtcataaggctctcccacctgttggactagtcttttgggttaggctctcctca 36976028  T
Q  275 tgggct 280  Q
    ||||||    
T  36976029 tgggct 36976034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 10567342 - 10567447
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||||||||| ||||| || ||||||||||||||  |  ||||| | ||||||||||||||||| || |||||||||||||||||||||| |||||    
T  10567342 taggagtcccacattgagtatatcaaagtgcttgatgtgatacttaaggcatgaggttctcccacctattgcactagtcttttgggttgggctctcctca 10567441  T
Q  275 tgggct 280  Q
    ||||||    
T  10567442 tgggct 10567447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 280
Target Start/End: Complemental strand, 15173570 - 15173468
Alignment:
Q  178 gagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgg 277  Q
    |||||||||| || |||| | |||||||||||||| ||  ||||  | ||||| ||||||||||  ||||||||||||||||||||||||| ||||||||    
T  15173570 gagtcccacaccgggtagctaaaagtgcttgatgtggtacttaacccatgaggctctcccaccttttggactagtcttttgggttgggctctcctcatgg 15173471  T
Q  278 gct 280  Q
    |||    
T  15173470 gct 15173468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 280
Target Start/End: Complemental strand, 22587080 - 22586978
Alignment:
Q  178 gagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgg 277  Q
    |||||||||||||||||  | |||||| ||||||||||  ||||| | ||||| |||| |||||| ||||||||||||||||||| |||||  |||||||    
T  22587080 gagtcccacatcgagtaactaaaagtgtttgatgtagtacttaagccatgaggctctcacacctattggactagtcttttgggtttggctcttctcatgg 22586981  T
Q  278 gct 280  Q
    |||    
T  22586980 gct 22586978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 16253757 - 16253846
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgg 264  Q
    |||||||| |||||||||||||| ||| |||| | ||| ||  ||| |||  ||| |||||||| ||||||||||| |||||||||||||    
T  16253757 taggagtctcacatcgagtagataaaaatgctcggtgtggtacttaggtcacgagattctcccaactaatggactaatcttttgggttgg 16253846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 277
Target Start/End: Complemental strand, 39570010 - 39569932
Alignment:
Q  199 aaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgg 277  Q
    |||||||||||||||||  ||||  | ||||||||| ||||||| ||||||||||| |||| |||  ||| ||||||||    
T  39570010 aaagtgcttgatgtagtacttaaaccttgaggttcttccacctattggactagtctcttggattgaactctcctcatgg 39569932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 22599179 - 22599091
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttg 263  Q
    |||||||||||||||| |||  | |||||| ||||| | ||  ||||||| ||||| |||| || ||| |||||||||||||| |||||    
T  22599179 taggagtcccacatcgggtaactaaaagtgtttgatatggtacttaagtcatgaggctctctcatctattggactagtcttttaggttg 22599091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 32024953 - 32025058
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  32024953 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctca 32025052  T
Q  275 tgggct 280  Q
    ||||||    
T  32025053 tgggct 32025058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 32025249 - 32025354
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  32025249 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctca 32025348  T
Q  275 tgggct 280  Q
    ||||||    
T  32025349 tgggct 32025354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 32025545 - 32025650
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  32025545 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctca 32025644  T
Q  275 tgggct 280  Q
    ||||||    
T  32025645 tgggct 32025650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 175 - 277
Target Start/End: Complemental strand, 31412510 - 31412408
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    ||||||||||||||||||||||| ||| |||||||||| ||  ||||| ||||||||||||||||||| |  |||||||||||||||||| ||| |||||    
T  31412510 taggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccgtgaggttctcccacctattcaactagtcttttgggttggactctcctca 31412411  T
Q  275 tgg 277  Q
    |||    
T  31412410 tgg 31412408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 9448741 - 9448648
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctc 268  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | ||||||||||||||||| ||||||||| |||||||||||||||    
T  9448741 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctc 9448648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 280
Target Start/End: Complemental strand, 4663045 - 4662942
Alignment:
Q  178 gagtcccacatcgagtagattaaagtgcttgatgtagt-gtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatg 276  Q
    ||||| |||||| |||||||||||||||||||||| ||  |||| ||| |||||||||||||| ||||| | | ||||| || ||||||||| ||| |||    
T  4663045 gagtctcacatcaagtagattaaagtgcttgatgtggtattttaggtcatgaggttctcccacttaatgaaatggtcttctgcgttgggctctccttatg 4662946  T
Q  277 ggct 280  Q
    ||||    
T  4662945 ggct 4662942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 4119118 - 4119211
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctc 268  Q
    ||||||||||||||||||||||| |||||| | ||  | ||  ||||| | ||||| ||| ||||| |||||||||||||||||||| ||||||    
T  4119118 taggagtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctc 4119211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 51865811 - 51865915
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||||||||| |||||||  | |||| ||||||| ||  ||||||| ||| ||||||||||||| | |||||||||||  ||||||| || |||||    
T  51865811 taggagtcccacatagagtagaacatagtgtttgatgtggtacttaagtcatgaagttctcccacctattagactagtctttcaggttggg-tctcctca 51865909  T
Q  275 tgggct 280  Q
    ||||||    
T  51865910 tgggct 51865915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 34228498 - 34228447
Alignment:
Q  226 tgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgg 277  Q
    ||||| |||||||| |||||||||||||||||||||||| ||| ||||||||    
T  34228498 tgaggctctcccacttaatggactagtcttttgggttggactctcctcatgg 34228447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 34228254 - 34228200
Alignment:
Q  226 tgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgggct 280  Q
    ||||| ||||| |||||||||||| |||||||| ||||||||| |||| ||||||    
T  34228254 tgaggctctccgacctaatggactggtcttttgagttgggctctcctcgtgggct 34228200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 50013745 - 50013661
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgg 259  Q
    |||||||||||||| ||||| ||||||  | ||||||| || |||||||| ||| | |||| ||| ||||||||  |||||||||    
T  50013745 taggagtcccacattgagtaaattaaaaggtttgatgtggtatttaagtcatgatgctctctcacttaatggacgggtcttttgg 50013661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 175 - 277
Target Start/End: Original strand, 19987942 - 19988044
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    ||||||||||||||||||||||| ||| |||||||||| ||  ||||| | ||||||||||||||||| |||||||||||| |||||||||||| |||||    
T  19987942 taggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccatgaggttctcccacctattggactagtcttctgggttgggctctcctca 19988041  T
Q  275 tgg 277  Q
    |||    
T  19988042 tgg 19988044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 7833857 - 7833767
Alignment:
Q  190 gagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgggct 280  Q
    |||||||| |||||||||||||| ||  ||||||| ||||| |||||||||||||||||||||||||||||||||| |  |||||||||||    
T  7833857 gagtagataaaagtgcttgatgtggtacttaagtcatgaggctctcccacctaatggactagtcttttgggttgggtttccctcatgggct 7833767  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 277
Target Start/End: Original strand, 19987648 - 19987750
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    ||||||||||||||||||||||| ||| || ||||||| ||  ||||| | ||||||||||||||||| |||||||||||| |||||| ||||| |||||    
T  19987648 taggagtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgaggttctcccacctattggactagtcttctgggttaggctctcctca 19987747  T
Q  275 tgg 277  Q
    |||    
T  19987748 tgg 19987750  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 280
Target Start/End: Complemental strand, 8107531 - 8107426
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    ||||||||||||||||||||||| |||||||||||||| ||  |||||   ||||||||||||| | | || ||||| |||||| ||||||||| ||| |    
T  8107531 taggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaagctatgaggttctcccatccattgaactagccttttgagttgggctctcctta 8107432  T
Q  275 tgggct 280  Q
    ||||||    
T  8107431 tgggct 8107426  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 38978716 - 38978805
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgg 264  Q
    |||||||||||||| |||||||| |||||| ||||||| ||  ||||  | ||||| ||| |||||||||||| ||||||||| ||||||    
T  38978716 taggagtcccacatggagtagataaaagtgtttgatgtggtacttaaaccatgaggctcttccacctaatggattagtctttttggttgg 38978805  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 11028758 - 11028862
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||| ||||||||||| || |||||| |||||||  | |||||  | ||||| |||| |||||||||||||| | ||||||||||| |||  ||||    
T  11028758 taggagtctcacatcgagtaaataaaagtgtttgatgtgatatttaaaccatgaggatctctcacctaatggacta-ttttttgggttggtctcttctca 11028856  T
Q  275 tgggct 280  Q
    ||||||    
T  11028857 tgggct 11028862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 18936184 - 18936232
Alignment:
Q  232 tctcccacctaatggactagtcttttgggttgggctcacctcatgggct 280  Q
    |||||||| |||| || |||||||||||||||||||| |||||||||||    
T  18936184 tctcccacttaatagaatagtcttttgggttgggctctcctcatgggct 18936232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 175 - 280
Target Start/End: Complemental strand, 8356328 - 8356223
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||||||||||||||| || |||||||||||||| ||  ||||| | |||||||||||||||||  |||||||| ||||||||||||||| |||||    
T  8356328 taggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctataggactagttttttgggttgggctctcctca 8356229  T
Q  275 tgggct 280  Q
    ||||||    
T  8356228 tgggct 8356223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 3958464 - 3958364
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||| |||||||||||||| ||||| |||||||| ||  ||||||| ||||||||||||| |||  ||||||||||||||| |||||||| |||||    
T  3958464 taggagtctcacatcgagtagatcaaagtacttgatgtggtacttaagtcatgaggttctcccatctataggactagtcttttggattgggctctcctca 3958365  T
Q  275 t 275  Q
    |    
T  3958364 t 3958364  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 17944568 - 17944657
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgg 264  Q
    ||||||||||||||||||||||| |||||||| ||||| ||  ||||| | ||||| ||||||| |||||||||||||||||| ||||||    
T  17944568 taggagtcccacatcgagtagataaaagtgctcgatgtggtacttaagccatgaggctctcccatctaatggactagtctttttggttgg 17944657  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 23071747 - 23071852
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||||| |||||||||||| ||| || ||||||| ||  ||||  | ||| ||||||||||||| ||||||||||||||||||||||||| | |||    
T  23071747 taggagtccctcatcgagtagatcaaaatgtttgatgtggtacttaaaccatgaagttctcccacctattggactagtcttttgggttgggctctcatca 23071846  T
Q  275 tgggct 280  Q
    ||||||    
T  23071847 tgggct 23071852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 280
Target Start/End: Complemental strand, 13789614 - 13789509
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||||||||||| |||  | |||||||||||||| ||  ||||| | || || ||||||||||| ||||||||| |||| |||||||||| ||||     
T  13789614 taggagtcccacatcgggtaactaaaagtgcttgatgtggtacttaagccatggggctctcccacctattggactagttttttaggttgggctctcctct 13789515  T
Q  275 tgggct 280  Q
    ||||||    
T  13789514 tgggct 13789509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 25193994 - 25194084
Alignment:
Q  178 gagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctc 268  Q
    ||||||||||||| ||| || ||| || ||||||| ||  ||||| | ||||| ||| |||||||||||| ||||||||||||||||||||    
T  25193994 gagtcccacatcgggtaaataaaaatgtttgatgtggtacttaagccatgaggctcttccacctaatggattagtcttttgggttgggctc 25194084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 23072053 - 23072158
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    ||||||||||||||||||||||| ||| ||||| ||||  |  ||||  | ||| ||||||||||||| |||||||  |||||||||| ||||| | |||    
T  23072053 taggagtcccacatcgagtagatcaaaatgcttaatgtgatacttaaaccatgaagttctcccacctattggactacacttttgggttaggctctcttca 23072152  T
Q  275 tgggct 280  Q
    ||||||    
T  23072153 tgggct 23072158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 280
Target Start/End: Original strand, 37223838 - 37223942
Alignment:
Q  176 aggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctcat 275  Q
    ||||||||||||| |||||||| ||||||||  |||  ||  ||||| | ||||  ||||||||||||||||||||||||  | ||||||||| ||| ||    
T  37223838 aggagtcccacattgagtagataaaagtgctcaatgaggtacttaagccatgagactctcccacctaatggactagtcttaggcgttgggctctccttat 37223937  T
Q  276 gggct 280  Q
    |||||    
T  37223938 gggct 37223942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 3958169 - 3958077
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctc 268  Q
    |||||||||||| |||||||||| || || ||||||||  |  ||||||  |||||||||||||||||  |||||||||||||| |||| ||||    
T  3958169 taggagtcccacgtcgagtagatcaa-gtacttgatgtgatacttaagttatgaggttctcccacctataggactagtcttttgagttgagctc 3958077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 2196756 - 2196848
Alignment:
Q  181 tcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctc 273  Q
    ||||||||||||||||| |||  ||||||||| ||  ||||||| ||||  ||| ||||||||| |||||||| ||||| ||| |||| ||||    
T  2196756 tcccacatcgagtagataaaaaagcttgatgtggtacttaagtcatgagactcttccacctaatagactagtcatttggattgagctctcctc 2196848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 23072349 - 23072416
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccaccta 242  Q
    ||||||||||||||||||||||| ||| |||||||||| ||  ||||  | ||| |||||||||||||    
T  23072349 taggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaaaccatgaagttctcccaccta 23072416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 7406933 - 7406897
Alignment:
Q  239 cctaatggactagtcttttgggttgggctcacctcat 275  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  7406933 cctaatggactagtcttttgggttgagctctcctcat 7406897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 25194476 - 25194528
Alignment:
Q  226 tgaggttctcccacctaatggactagtcttttgggttgggctcacctcatggg 278  Q
    ||||| |||||| ||||||| |||||| ||||||||| | |||||||||||||    
T  25194476 tgaggctctcccccctaatgaactagtgttttgggttagactcacctcatggg 25194528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 280
Target Start/End: Complemental strand, 3870886 - 3870781
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttttgggttgggctcacctca 274  Q
    |||||||| ||||||||||||||| || |||||||||| ||  |||||    |||| |||||||||   ||||||||||||||||||||||||| |||||    
T  3870886 taggagtctcacatcgagtagatttaaatgcttgatgtggtacttaagctacgaggctctcccaccatttggactagtcttttgggttgggctctcctca 3870787  T
Q  275 tgggct 280  Q
    ||||||    
T  3870786 tgggct 3870781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 280
Target Start/End: Original strand, 7407878 - 7407932
Alignment:
Q  226 tgaggttctcccacctaatggactagtcttttgggttgggctcacctcatgggct 280  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||    
T  7407878 tgaggttctcccacctattggactagttttttgggttgggctctcctcatgggct 7407932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 19997181 - 19997100
Alignment:
Q  175 taggagtcccacatcgagtagattaaagtgcttgatgtagtgtttaagtcgtgaggttctcccacctaatggactagtcttt 256  Q
    ||||| || ||||||||||| || ||| |||||||||| ||  ||||||| | || |||||||||||| | |||||||||||    
T  19997181 taggaatctcacatcgagtatatcaaaatgcttgatgtggtacttaagtcctaagattctcccacctattagactagtcttt 19997100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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