View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12943_high_49 (Length: 280)
Name: NF12943_high_49
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_high_49 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 17379887 - 17380146
Alignment:
| Q |
16 |
aaatgctcaaaaccaaaccacataggaaaattaatatttcacacaggttaaaa-tgctgcagattgtcccaaacttcaaactcttaactttataaagatt |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17379887 |
aaatgctcaaaatcaaaccacataggaaaattaatatttcacacaggttaaaaatgctacagattggcccaaacttcaaactcttaactttataaagatt |
17379986 |
T |
|
| Q |
115 |
agtttgacacatcaatgggtagtttatactgnnnnnnnactc--tcttatcttctgagtatttttacaaatcctattttgtctttgatcgacaagaaaag |
212 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17379987 |
tgtttgacacatcaatgggtagtttatgctgtttttttactcgatcttatcttctgagtatttttacaaatcctactttgtctttgatcgacaagaaaag |
17380086 |
T |
|
| Q |
213 |
aactcaacaacatagagcattgggaatatccttatcatgttctagattgtgtttcatctc |
272 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17380087 |
aactcaacaacttagagcattgggaatatccatatcatgttctagattgtgtttcatctc |
17380146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 272
Target Start/End: Original strand, 17377460 - 17377563
Alignment:
| Q |
167 |
tgagtatttttacaaatcctattttgtctttgatcgacaagaaaagaactcaacaa-catagagcattgggaatatccttatcatgttctagattgtgtt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| | || || ||||||| ||||| ||||||||||||| ||||||||| ||| |||||| |
|
|
| T |
17377460 |
tgagtatttttacaaatcctattttgtctcggatcgacaggcgaataattcaacaaccatag---attgggaatatccagatcatgttccagaatgtgtt |
17377556 |
T |
|
| Q |
266 |
tcatctc |
272 |
Q |
| |
|
|| |||| |
|
|
| T |
17377557 |
tcgtctc |
17377563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 267
Target Start/End: Original strand, 17383826 - 17383926
Alignment:
| Q |
168 |
gagtatttttacaaatcctattttgtctttgatcgacaagaaaagaactcaacaa-catagagcattgggaatatccttatcatgttctagattgtgttt |
266 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| |||| | |||| ||| ||| ||||||||||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
17383826 |
gagtatttttacatatcctattttgtctcggattgacaggcggagaattcagcaagcatagagcattgggaatatccagatcatgttccagaatgtgttt |
17383925 |
T |
|
| Q |
267 |
c |
267 |
Q |
| |
|
| |
|
|
| T |
17383926 |
c |
17383926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 17392578 - 17392641
Alignment:
| Q |
210 |
aagaactcaacaac-atagagcattgggaatatccttatcatgttctagattgtgtttcatctc |
272 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| ||||||||| ||| |||||||| |||| |
|
|
| T |
17392578 |
aagaattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctc |
17392641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 26052928 - 26052822
Alignment:
| Q |
167 |
tgagtatttttacaaatcctattttgtctttgatcgacaagaaaagaactcaacaac-atagagcattgggaatatccttatcatgttctagattgtgtt |
265 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| |||| || ||| | |||||||| |||||||||||||||||||| ||||||||| ||| |||||| |
|
|
| T |
26052928 |
tgagtatttttacaaatcctattttgtatcggattgacaggagaagtattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtt |
26052829 |
T |
|
| Q |
266 |
tcatctc |
272 |
Q |
| |
|
||||||| |
|
|
| T |
26052828 |
tcatctc |
26052822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University