View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12943_high_5 (Length: 663)

Name: NF12943_high_5
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12943_high_5
NF12943_high_5
[»] chr4 (1 HSPs)
chr4 (19-651)||(14260396-14261031)
[»] chr2 (2 HSPs)
chr2 (23-237)||(22135688-22135902)
chr2 (426-651)||(22135905-22136130)
[»] chr1 (1 HSPs)
chr1 (588-651)||(19723971-19724034)


Alignment Details
Target: chr4 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 19 - 651
Target Start/End: Complemental strand, 14261031 - 14260396
Alignment:
Q  19 actaccgaattatgacgtttgaatcttccaaggagttcctcatcatcattgatttttgaaatcggataacatttctcaccatcacatcctgcaccaactt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14261031 actaccgaattatgacgtttgaatcttccaaggagttcctcatcatcattgatttttgaaatcggataacatttctcaccatcacatcctgcaccaactt 14260932  T
Q  119 tggagaaaaccttgaatagatagcattttccgaccatattgagtagttcatcaggaacataagaactcattccaacctacatcatacaattatttaatgg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14260931 tggagaaaaccttgaatagatagcattttccgaccatattgagtagttcatcaggaacataagaactcattccaacctacatcatacaattatttaatgg 14260832  T
Q  219 ataaattttagaattctatatatacaaaaacttaaaggnnnnnnnnnttgattcaaagatagtaacaaatatacattttcaccaaattcaagcattttac 318  Q
    ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14260831 ataaattttagaattctatatatacaaaaacttaaaggaaaaaaaaattgattcaaagatagtaacaaatatacattttcaccaaattcaagcattttac 14260732  T
Q  319 tacacggtatcccaaaaaactcagctgcaacgctatcatgcattagaaatgtggcagatcctgtgttgtcagtcacacggaatgtgatgcgaaacctata 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14260731 tacacggtatcccaaaaaactcagctgcaacgctatcatgcattagaaatgtggcagatcctgtgttgtcagtcacatggaatgtgatgcgaaacctata 14260632  T
Q  419 tctaatccaaattaatcttaaataatttgtactttatatgtccaaattaagtttattataagtaccaaactaatatt---nnnnnnnnnctaccttggag 515  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||            |||||||||||    
T  14260631 tccaatccaaattaatcttaaataatttgtactttatatgtccaaattaagtttattataagtaccaaattaatattaaaaaaaaaaaactaccttggag 14260532  T
Q  516 taatcattaaaacatgcttattacacctttcacaatagtaagcaggactgtcaagaacaacgtgttcatgacaaacacaagataaaaaccaccaaccacc 615  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||| |    
T  14260531 taatcattaaaacatgcttattacatctttcacaatagtaagcaggactgtcaggaacaacttgttcatgacaaatacaagataaaaaccaccaaccatc 14260432  T
Q  616 atcggtgacatattggtcaacagtggccatgatgat 651  Q
    |||||||||||||||||||||||||||||| |||||    
T  14260431 atcggtgacatattggtcaacagtggccattatgat 14260396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 23 - 237
Target Start/End: Original strand, 22135688 - 22135902
Alignment:
Q  23 ccgaattatgacgtttgaatcttccaaggagttcctcatcatcattgatttttgaaatcggataacatttctcaccatcacatcctgcaccaactttgga 122  Q
    |||||||||||||||||||| || |||  ||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  22135688 ccgaattatgacgtttgaatttttcaataagttcctcatcgtcattgatttttgaaattggatgacatttctcaccatcacatcctgcaccaactttgga 22135787  T
Q  123 gaaaaccttgaatagatagcattttccgaccatattgagtagttcatcaggaacataagaactcattccaacctacatcatacaattatttaatggataa 222  Q
    ||||||||||||||| |||||||| || ||||| || | ||||||||  | |||||||||||||| |||| |||||||| ||||  ||||||| ||||||    
T  22135788 gaaaaccttgaataggtagcatttccctaccatgttcaatagttcatttgaaacataagaactcactccagcctacatcgtacatatatttaaaggataa 22135887  T
Q  223 attttagaattctat 237  Q
    |||||||||||||||    
T  22135888 attttagaattctat 22135902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 426 - 651
Target Start/End: Original strand, 22135905 - 22136130
Alignment:
Q  426 caaattaatcttaaataatttgtactttatatgtccaaattaagtttattataagtaccaaactaatattnnnnnnnnnctaccttggagtaatcattaa 525  Q
    |||||||||  |||| |||| ||||| ||||| || ||||||| || ||||||| ||||||||||||||          | ||||  ||||||||||| |    
T  22135905 caaattaattataaacaattagtactctatatatcaaaattaaattcattataaataccaaactaatatacaaaaaagcccacctcagagtaatcattca 22136004  T
Q  526 aacatgcttattacacctttcacaatagtaagcaggactgtcaagaacaacgtgttcatgacaaacacaagataaaaaccaccaaccaccatcggtgaca 625  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||||| |||||||||||||||||||||||| ||||||||||| |||| |||| |    
T  22136005 aacatgcttattacacctttcacaatagtaggcaggactgtctggaacaacttgttcatgacaaacacaagataaataccaccaaccatcatcagtgata 22136104  T
Q  626 tattggtcaacagtggccatgatgat 651  Q
    ||||||||||||||| |||| |||||    
T  22136105 tattggtcaacagtgaccattatgat 22136130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 651
Target Start/End: Complemental strand, 19724034 - 19723971
Alignment:
Q  588 aaacacaagataaaaaccaccaaccaccatcggtgacatattggtcaacagtggccatgatgat 651  Q
    ||||| |||||||| ||||||||||| ||||  ||| ||||||||||||||||| ||| |||||    
T  19724034 aaacataagataaataccaccaaccatcatcaatgatatattggtcaacagtggtcattatgat 19723971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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