View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12943_high_58 (Length: 250)

Name: NF12943_high_58
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12943_high_58
NF12943_high_58
[»] chr7 (2 HSPs)
chr7 (9-99)||(16263284-16263373)
chr7 (30-96)||(39740990-39741055)
[»] chr4 (1 HSPs)
chr4 (30-96)||(6897454-6897519)


Alignment Details
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 16263284 - 16263373
Alignment:
Q  9 agcacagataaaatatgcaactttcaaacattgtagttttgtttcatcataagataccggctaaaaaatcatcttatatctgcagacatca 99  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||    
T  16263284 agcacagataaaatatgcaagtttcaaacattgtagttttgtttcatcataagatactggct-aaaaatcatcttatttctgcagacatca 16263373  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 39740990 - 39741055
Alignment:
Q  30 tttcaaacattgtagttttgtttcatcataagataccggctaaaaaatcatcttatatctgcagaca 96  Q
    |||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  39740990 tttcaaacattgtagttttgtttcatcataagataatggct-aaaaatcatcttatatctgcagaca 39741055  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 6897454 - 6897519
Alignment:
Q  30 tttcaaacattgtagttttgtttcatcataagataccggctaaaaaatcatcttatatctgcagaca 96  Q
    |||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  6897454 tttcaaacattgtagttttgtttcatcataagataatggct-aaaaatcatcttatatctgcagaca 6897519  T

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