View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_high_71 (Length: 227)
Name: NF12943_high_71
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_high_71 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 54233324 - 54233105
Alignment:
| Q |
8 |
cttttaatttttgttatagatcatacgtactaggatttcttgttgcaactaatattagataatacagattctctagataaaacataaacaatagtcagcc |
107 |
Q |
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| T |
54233324 |
cttttaattttagttatagatcatacgtactagcatttcttgttgcaactaatattagataatacagattctctagataaaacataaacaatagtcagcc |
54233225 |
T |
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| Q |
108 |
cattttcatttctttaaacgcggactcacaccaaagatgcatacatgaatttgattttaagcacacacgagactcttgtgacacccacaaatcccgctat |
207 |
Q |
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| T |
54233224 |
cattttcatttctttaaacgcggactcacaccaaagatgcatacatgaatttgattttaagcacacacgagactcttgtgacacccacaaatcccgctat |
54233125 |
T |
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| Q |
208 |
aatacacagttgcgtattgc |
227 |
Q |
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||||||||||| |||||||| |
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| T |
54233124 |
aatacacagttacgtattgc |
54233105 |
T |
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