View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_high_72 (Length: 220)
Name: NF12943_high_72
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_high_72 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 47372178 - 47371994
Alignment:
| Q |
19 |
tctaaaatataaaccttttcagcaagtgagtgcaaataaa-gtatcatacacgaataaaggttggtcagaaaatcaaccaactctagtttctagataaat |
117 |
Q |
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| T |
47372178 |
tctaaaatataaaccttttcagcaagtgagcgcaaataaaagtatcatacacgaataaaggttggtcagaaaatcaaccaactctagtttctagataaat |
47372079 |
T |
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| Q |
118 |
ttcaacttactttaaatttgtaatatatcatggaaataacaagtcataataattttttcataaacaaagtaagtaattgactata |
202 |
Q |
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| T |
47372078 |
ttcaacttactttaaatttgtaatatatcatggaaataacaagtcataaattttttttcataaacaaagtaagtaattgactata |
47371994 |
T |
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