View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_11 (Length: 590)
Name: NF12943_low_11
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 15 - 543
Target Start/End: Complemental strand, 50240432 - 50239907
Alignment:
| Q |
15 |
tcaaagacaacgttacgaggacgagaaccaaactcgacaccttgtgaatgaagaacttgtgtggcaaggtttggatcagagacaacaaccaagtttttgg |
114 |
Q |
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| T |
50240432 |
tcaaagacaacgttacgaggacgagaaccaaactcgacaccttgtgaatgaagaacttgtgtggcaaggtttggatcagagacaacaaccaagtttttgg |
50240333 |
T |
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| Q |
115 |
aaccaagtttgagtaggaaaagtggtccataagtttgtgacatggatgcaagcatacgatgattgagatcattgccaacttgaagccagtttccaaatat |
214 |
Q |
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| T |
50240332 |
aaccaagtttgagtaggaaaagtggtccataagtttgtgacatggatgcaagcatacgatgattgagatcattgccaacttgaagccagtttccaaatat |
50240233 |
T |
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| Q |
215 |
aggaacagaaaaagggcttggaggtgaagaatttttcttatggctgtttgaattggaattagttaggtatataaaccataataataatgtgatgaaagtg |
314 |
Q |
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| T |
50240232 |
aggaacagaaaaagggcttggaggtgaagaatttttcttatggctgtttgaattggaattagttaggtatataaaccataataataatgtgatgaaagtg |
50240133 |
T |
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| Q |
315 |
gcacaagcaattgaggttgagagagagggtgtaaaaaagagttttgtagtaattattggaatgagtatagcaaaaagagtgaaaaatattggnnnnnnng |
414 |
Q |
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| T |
50240132 |
gcacaagcaattgaggttgagagagagggtgtaaaaaagagttttgtagtaattattggaatgagtatagcaaaaagagtgaaaaatattggtttttttg |
50240033 |
T |
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| Q |
415 |
tgagttgaaggagagtcatgttttgatttgtgaggtagtaaaagataatttgaatggatgaattagagaattgtgatgggttggattaaggaatgagatt |
514 |
Q |
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| T |
50240032 |
tgagttgaaggagagtcatgttttgatttgtgaggtagtaaaagat-atttgaatggatgaatt--agaattgtgatgggttggattaaggaatgagatt |
50239936 |
T |
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| Q |
515 |
gtttatatatgttgggagtgacgaggtag |
543 |
Q |
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| T |
50239935 |
gtttatatatgttgggagtgacgaggtag |
50239907 |
T |
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