View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_14 (Length: 569)
Name: NF12943_low_14
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 11 - 551
Target Start/End: Original strand, 2591701 - 2592250
Alignment:
| Q |
11 |
catcatcatcctcagttgatcaattatagttccattaatcaactagataattactttaccaaccaagaaaatgtaacaacaaaagaaaccttattttcat |
110 |
Q |
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| T |
2591701 |
catcatcatcctcagttgatcaattatagttccattaatcaactagataattactttaccaaccaagaaaatgtaacaacaaaagaaaccttattttcat |
2591800 |
T |
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| Q |
111 |
caacatgtcctttatttatgtttgacacaagttcactgcatgaaacaacagcaacagacaccaatgtaataagaccagaagtactattccatcatgattc |
210 |
Q |
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| T |
2591801 |
caacatgtcctttatttatgtttgacacaagttcactgcatgaaacaacagcaacagacaccaatgtaataagaccagaagtactattccatcatgattc |
2591900 |
T |
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| Q |
211 |
tgtgagtttgagttctgacacatggaacttgaatcaccatgatcatc---------atcaagttcagacacttcctcctcatccagctgcaatagctttt |
301 |
Q |
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| T |
2591901 |
tgtgagtttgagttctgacacatggaacttgaatcaccatgatcatcatcaacatcatcaagttcagacacttcctcctcatccagctgcaatagctttt |
2592000 |
T |
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| Q |
302 |
acaacaattcatgatactagtaattataatcttccaccattgatagagaataatgtggaaaacagcatggtgccaattgatcaagtgcaatcttgtaata |
401 |
Q |
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| T |
2592001 |
acaacaattcatgatactagtaattataatcttccaccattgatagagaataatgtggaaaacagcatggtgccaattgatcaagtgcaatcttgtaata |
2592100 |
T |
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| Q |
402 |
tggatgaggaaggaggagagttattaacattggagtcattgcaattgcaaagacaagaagagttgaatgaatgggtggaaactcaacaacaatgtcctag |
501 |
Q |
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| T |
2592101 |
tggatgaggaaggaggagagttattaacattggagtcattgcaattgcaaagacaagaagagttgaatgaatgggtggaaactcaacaacaatgtcctag |
2592200 |
T |
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| Q |
502 |
ctttattttcagctgggagagtgttgaaggacaaattggaggtgaagaac |
551 |
Q |
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| T |
2592201 |
ctttattttcagctgggagagtgttgaaggacaaattggaggtgaagaac |
2592250 |
T |
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