View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_16 (Length: 551)
Name: NF12943_low_16
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 29070107 - 29070613
Alignment:
| Q |
1 |
tttaacacagcttatctgaaaaaagggaaaagtgcatttggctccttcttcacccaacgttaatgcaagaagacacatcaaattannnnnnnnnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29070107 |
tttaacacagcttatctgaaaaaagggaaaagtgcatttggctccttcttcacccaacgttaatgcaagaagacacatcaaattattttcctttcttttc |
29070206 |
T |
|
| Q |
101 |
nnnnnggataatacaagacacgtcaactccgagacattgttcttcttgtccttgaaatgctagggcacttttgcatgtagtggtttgcggcaaattatct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29070207 |
tttttggataatacaagacacgtcaactccgagacattgttcttcttgtccttgaaatgctagggcacttttgcatgtagtggtttgcggcaaattatct |
29070306 |
T |
|
| Q |
201 |
aacaacatagcaatggatcaaaccgatgaaagtctctcatatttacttccatgtaaaaagcttaaccttcatgttccactatgattttctttatgctgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29070307 |
aacaacatagcaatggatcaaaccgatgaaagtctctcatatttacttccatgtaaaaagcttaaccttcatgttccactatgattttctttatgctgtt |
29070406 |
T |
|
| Q |
301 |
ttcttgtactatcaatgttaacgaagaaccttgcagaagaccaaaaattaattcatcctcgcctatgaaacacaaacactcttcaaatcatgagtgtttc |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29070407 |
ttcttgtactatcaatgtcaacgaagaaccttgcagaagaccaaaaattaattcatcctcgcctatgaaacataaacactcttcaaatcatgagtgtttc |
29070506 |
T |
|
| Q |
401 |
cgtgtcggactattgttggcatttaacaccaacacgatatgattacactaaactttatgcgatttttattggacattagtttacctatgtttgatcgaaa |
500 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
29070507 |
cgtgtcggactcatgttggcatttaacaccaacacgatatgattacactaaactttatgcgattttcattggacattagtttacttatgtttgatcgaaa |
29070606 |
T |
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| Q |
501 |
taaagta |
507 |
Q |
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||||||| |
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| T |
29070607 |
taaagta |
29070613 |
T |
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