View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_17 (Length: 538)
Name: NF12943_low_17
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 16 - 521
Target Start/End: Complemental strand, 25323155 - 25322647
Alignment:
| Q |
16 |
atgtcaaaagttagtgcacttgacacagtcggtttggttaaactgcatgattcaccaagtgcgtgttagattgacggtgaatttggcgaaatcaatgtga |
115 |
Q |
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| T |
25323155 |
atgtcaaaagttagtgcacttgacacagtcggtttggttaaactgcatgattcaccaagtgcgtgttagattgacggtgaatttggcgaaatcaatgtga |
25323056 |
T |
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| Q |
116 |
cgtcatgattttgtcgaagtttcggagcgttgtttttgctaaaagcacgatggcataccgtgatactaccaaacccattgtcggtccaaacatgcatagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25323055 |
cgtcatgattttgtcgaagtttcggagcgttgtttttgctaaaagcacgatggcataccgtgatactaccaaacccattgtcggtccaaacatgcatagt |
25322956 |
T |
|
| Q |
216 |
gccctaagtcaatttgattataattgtctagcattgaaatattatgttgcctatagttctaaccatcttattctcatgtatgaacagacggaaaaggacc |
315 |
Q |
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| T |
25322955 |
gcgctaagtcaatttgattataattgtctagcattgaactattatgttgcctatagttctaaccatcttattctcatgtatgaacagacggaaaaggatc |
25322856 |
T |
|
| Q |
316 |
ggtaaatccaaaaggattacagtactacaacaatcttatagatgaattgataagccatggttctttcgaatactacattttccttttcggtcactttg-- |
413 |
Q |
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| T |
25322855 |
ggtaaatccaaaaggattacagtactacaacaatcttatagatgaattgataagccatggttctttcgaatactacattttccttttcggtcactttgac |
25322756 |
T |
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| Q |
414 |
-actaacatcttagagaggttgatccaatgtcgatgcatatttacttttgttgttgtttctacatcttgtaggaatccaaccacatgttacattacatca |
512 |
Q |
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| T |
25322755 |
tactaacatcttagagaggttgatccaatgtcgatgcatatttacttttgttgttgtttctacatcttgtaggaatccaaccacatgttacattacatca |
25322656 |
T |
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| Q |
513 |
ttgggatct |
521 |
Q |
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| T |
25322655 |
ttgggatct |
25322647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 296
Target Start/End: Complemental strand, 25325691 - 25325586
Alignment:
| Q |
191 |
cattgtcggtccaaacatgcatagtgccctaagtcaatttgattataattgtctagcattgaaatattatgttgcctatagttctaaccatcttattctc |
290 |
Q |
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|||||| | ||||||||||||||||||||||| ||| ||||| |||| ||||||| || | || | || ||| | |||| |||||| ||||||||||||| |
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| T |
25325691 |
cattgttgttccaaacatgcatagtgccctaactcagtttgaatatagttgtctaacaataaattgttttgtcgactattgttctagccatcttattctc |
25325592 |
T |
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| Q |
291 |
atgtat |
296 |
Q |
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|||||| |
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| T |
25325591 |
atgtat |
25325586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 521
Target Start/End: Complemental strand, 5219866 - 5219824
Alignment:
| Q |
479 |
ttgtaggaatccaaccacatgttacattacatcattgggatct |
521 |
Q |
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| T |
5219866 |
ttgtaggaatccaaccacatgttactttaaatcactgggatct |
5219824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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