View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_18 (Length: 518)
Name: NF12943_low_18
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 19 - 508
Target Start/End: Complemental strand, 1316081 - 1315592
Alignment:
| Q |
19 |
aatctagggaaaaatcatcattgtcatccatgaattttctactttcttaaagaatagagtgaagtcgtggatggaagtaatgaatttgcctactttattt |
118 |
Q |
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| T |
1316081 |
aatctagggcaaaatcatcattgtcatccatgaattttctactttcttaaagaatagagtgaagtcgtggatggaagtaatgaatttgcctactttattt |
1315982 |
T |
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| Q |
119 |
ctaatcgacccggacatcagtggtatgatgagtgccttgtatgaggtctatctgtcgcgttactcggatgactatgatgaagc-cctccggttgatcaat |
217 |
Q |
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| T |
1315981 |
ctaatcgacccggacatcagtggtatgatgagtgccttgtatgaggtctatctgtcgcgttactcggatgactatgatgaagctcctccggttgatcaat |
1315882 |
T |
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| Q |
218 |
attttacagtcccaactaagtccctcaatgtcaaacacagcatggcttgtttgcaccaaaacaacacaacttctctggctgacttgagtatatgcatcat |
317 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1315881 |
attttacagtcccaactaagtccctccatgtcatacacagcatggcttgtttgcaccaaaacaacacaacttctctggctgacttgagtttatgcatcat |
1315782 |
T |
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| Q |
318 |
atcgtacctgcctcgcaacaagtcttcctaaatttgagccacattattcacctacatcacacccaagaggattctttggatttacattactcacttgcac |
417 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1315781 |
atcgtacctgcctcgcaacaagtcttcctaaacttgagccacattattcacctatatcacacccaagaggattctttggatttacattactcacttgcac |
1315682 |
T |
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| Q |
418 |
tatccccacacaacaactcaagatacttgaccaacttcattttccaacaccattctactaccaaactttcttggaactcacttcacctatg |
508 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1315681 |
tattcccacacaacaactcaagatacttgaccaacttcattttccaacaccattctactaccaaactttctt-gaactcacttcacctatg |
1315592 |
T |
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