View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12943_low_21 (Length: 501)

Name: NF12943_low_21
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12943_low_21
NF12943_low_21
[»] chr6 (1 HSPs)
chr6 (15-485)||(29336220-29336685)
[»] chr8 (6 HSPs)
chr8 (250-484)||(24323173-24323406)
chr8 (250-485)||(24126578-24126820)
chr8 (350-485)||(10949613-10949748)
chr8 (350-485)||(10957618-10957753)
chr8 (264-485)||(140864-141085)
chr8 (250-295)||(10947326-10947371)
[»] chr3 (2 HSPs)
chr3 (266-485)||(6251567-6251788)
chr3 (368-485)||(6172328-6172445)
[»] chr1 (3 HSPs)
chr1 (338-469)||(19036983-19037114)
chr1 (250-306)||(48526-48582)
chr1 (431-485)||(22376357-22376411)
[»] chr2 (1 HSPs)
chr2 (250-485)||(9683757-9683982)
[»] chr7 (1 HSPs)
chr7 (250-485)||(19280124-19280354)
[»] chr4 (3 HSPs)
chr4 (407-485)||(18585298-18585376)
chr4 (444-485)||(23808207-23808248)
chr4 (249-289)||(41681124-41681164)


Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 15 - 485
Target Start/End: Original strand, 29336220 - 29336685
Alignment:
Q  15 gaattgatctgataaaagttttagccatatatatccaagaaaagtggtggtgggttaattgcaagcaagcagtagtcccatgttttcccataagcctcat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||    
T  29336220 gaattgatctgataaaagttttagccatatatatccaagaaaagtggtggtgggttaattgcaagca----gtagtcacatgttttcccataagcctcat 29336315  T
Q  115 tgcgcgtgagagccatgataattgactttgccagttgtttatttatttt-ttgggtgtcatgattaaaaactagaaaattataaacataaatacatccac 213  Q
    ||||||||| ||||||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29336316 tgcgcgtgacagccatgataattgactttgccatttgtttttttttttttttgggtgtcatgattaaaaactagaaaattataaacataaatacatccac 29336415  T
Q  214 aataacataaattcagcttggttgaaactcaaattataaagatatggctaaatatctcaatgacttttagtttggtattgggattttaggtggagcagag 313  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| |||||||||||||| ||    
T  29336416 aataacataatttcagcttggttgaaactcaaattataaagatatgactaaatatctcaatgactttcagtttgatattggggttttaggtggagcaaag 29336515  T
Q  314 gtcactttgcatagtgctaagagagtgttgagcttgcgatatgaagatggttttttgactatgcccacaatagatttttcgaatccctacaacttggtag 413  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29336516 gtcactttgcatagtgctaagagagtgttgagcttgtgacatgaagatggtttttt-actatgcccacaatagatttttcgaatccctacaacttggtag 29336614  T
Q  414 acaagtcggcactactacgtgaggtgagattgagatgtccatctacttctttatgggttgagtttctttatg 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29336615 acaagtcggcactactacgtgaggtgagattgagatgtccatctacttctttat-ggttgagtttctttatg 29336685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 250 - 484
Target Start/End: Complemental strand, 24323406 - 24323173
Alignment:
Q  250 taaagatatggctaaatatctcaatgacttttagtttggtattgggattttaggtggagcagaggtcactttgcatagtgctaagagagtgttgagcttg 349  Q
    |||| |||||||||| ||||||||||||||| ||||||||  |||  ||| |||| | ||||||   | ||||||||||||||| | |||||||||| ||    
T  24323406 taaaaatatggctaagtatctcaatgactttcagtttggtgatggagtttcaggtagggcagagacgattttgcatagtgctaacaaagtgttgagcctg 24323307  T
Q  350 cgatatgaagatggttttttgactatgcccacaatagatttttcgaatccctacaacttggtagacaagtcggcactactacgtgaggtgagattgagat 449  Q
     || ||| ||||||||  |||||||||| |||| ||||||||| |||| ||| |||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  24323306 tgacatggagatggttcattgactatgctcacagtagattttt-gaatgccttcaacttggtagacatgtcggcactgctacgtgaggtaagattgagat 24323208  T
Q  450 gtccatctacttctttatgggttgagtttctttat 484  Q
    | || |||| ||| |||||||||||||||||||||    
T  24323207 gcccgtctatttcattatgggttgagtttctttat 24323173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 250 - 485
Target Start/End: Complemental strand, 24126820 - 24126578
Alignment:
Q  250 taaagatatggctaaatatctcaatgacttttagtttggtattgggattttaggtggagcagaggtcactttgcatagtgctaagagagtgttgagcttg 349  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||| || |||| || |||||| ||||  || || ||||| | | ||    
T  24126820 taaatatatggctaaatatctcaatgacttttagtttggtgttggggtttcaggtggggcggaggccattttgcacagtgtcaacagggtgttaaacctg 24126721  T
Q  350 cgatatgaagat-------ggttttttgactatgcccacaatagatttttcgaatccctacaacttggtagacaagtcggcactactacgtgaggtgaga 442  Q
    ||| ||| ||||       ||||  ||||||||||  | | ||||||||| ||||   | ||||||||||| || |||| |||| |||||||||||||||    
T  24126720 cgacatggagattagagatggttccttgactatgcttatagtagattttttgaatgttttcaacttggtaggcaggtcgacactgctacgtgaggtgaga 24126621  T
Q  443 ttgagatgtccatctacttctttatgggttgagtttctttatg 485  Q
    |||||||| | ||||| ||||||| ||||| |||||| |||||    
T  24126620 ttgagatgcctatctatttctttaagggtttagtttcattatg 24126578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 350 - 485
Target Start/End: Original strand, 10949613 - 10949748
Alignment:
Q  350 cgatatgaagatggttttttgactatgcccacaatagatttttcgaatccctacaacttggtagacaagtcggcactactacgtgaggtgagattgagat 449  Q
    ||||||| ||||||||  |||||||||| |||| ||| |||||||||| | | |||||||||||||| |||  || |  | ||||| |||||||||||||    
T  10949613 cgatatggagatggttccttgactatgctcacagtagttttttcgaatgctttcaacttggtagacatgtcaacattgttgcgtgaagtgagattgagat 10949712  T
Q  450 gtccatctacttctttatgggttgagtttctttatg 485  Q
    ||||||||| ||||||||| |||||| || ||||||    
T  10949713 gtccatctatttctttatgagttgagcttttttatg 10949748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 350 - 485
Target Start/End: Original strand, 10957618 - 10957753
Alignment:
Q  350 cgatatgaagatggttttttgactatgcccacaatagatttttcgaatccctacaacttggtagacaagtcggcactactacgtgaggtgagattgagat 449  Q
    ||||||| ||||||||  |||||||||| |||| ||| |||||||||| | | |||||||||||||| |||  || |  | ||||| |||||||||||||    
T  10957618 cgatatggagatggttccttgactatgctcacagtagttttttcgaatgctttcaacttggtagacatgtcaacattgttgcgtgaagtgagattgagat 10957717  T
Q  450 gtccatctacttctttatgggttgagtttctttatg 485  Q
    ||||||||| ||||||||| |||||| || ||||||    
T  10957718 gtccatctatttctttatgagttgagcttttttatg 10957753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 264 - 485
Target Start/End: Complemental strand, 141085 - 140864
Alignment:
Q  264 aatatctcaatgactttt-agtttggtattgggattttaggtggagcagaggtcactttgcatagtgctaagagagtgttgagcttgcgatatgaagatg 362  Q
    |||||||||||||||||| |||||| |||| | || | |||||| ||| ||| || ||||||||||   || |  ||||||||||  | | ||| |||||    
T  141085 aatatctcaatgacttttcagtttgatattagcatatcaggtggtgca-aggccattttgcatagtatcaataaggtgttgagctaacaacatggagatg 140987  T
Q  363 gttttttgactatgcccacaatagatttttcgaatccctacaacttggtagacaagtcggcactactacgtgaggtgagattgagatgtccatctacttc 462  Q
    |||||||  |||||| ||| |||||||| |||||| | | ||||||| |||||| ||||||| | || | | |||||||  |||||||  | | || |||    
T  140986 gttttttatctatgctcacgatagatttctcgaatgctttcaacttgatagacacgtcggcattgctgcatcaggtgagtctgagatgctcgtatatttc 140887  T
Q  463 tttatgggttgagtttctttatg 485  Q
    |||||||||||||| ||||||||    
T  140886 tttatgggttgagtctctttatg 140864  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 10947326 - 10947371
Alignment:
Q  250 taaagatatggctaaatatctcaatgacttttagtttggtattggg 295  Q
    |||| ||||||||||||||||| |||||||| |||||||| |||||    
T  10947326 taaaaatatggctaaatatctctatgactttcagtttggtgttggg 10947371  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 266 - 485
Target Start/End: Original strand, 6251567 - 6251788
Alignment:
Q  266 tatctcaatgacttttagtttggtattgggattttaggtggagcagaggtcactttgcatagtgctaagagagtgttgagcttgcgatatgaagatggtt 365  Q
    ||||||||||| ||| |||||||| || || ||| | |||| ||||||| || |||||||||||  || ||||| |||| | | ||| ||| ||||||||    
T  6251567 tatctcaatgaatttcagtttggtgttagggtttgaagtggggcagaggccattttgcatagtgtcaatagagtattgaacctacgacatggagatggtt 6251666  T
Q  366 ttttgactatgcccacaatagatttttcgaatccctacaacttggtagacaagtcggcactactacgtgaggtgagattgagatgtccatctact--tct 463  Q
      ||||| ||||  | | |||||||||||||| ||| |||||||||||| | ||| ||||| |||||||| |||||||||||||| ||||||| |  |||    
T  6251667 ccttgacaatgcttatagtagatttttcgaatgccttcaacttggtagataggtcagcactgctacgtgatgtgagattgagatgcccatctatttctct 6251766  T
Q  464 ttatgggttgagtttctttatg 485  Q
     |||||||||||||||||||||    
T  6251767 ctatgggttgagtttctttatg 6251788  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 368 - 485
Target Start/End: Original strand, 6172328 - 6172445
Alignment:
Q  368 ttgactatgcccacaatagatttttcgaatccctacaacttggtagacaagtcggcactactacgtgaggtgagattgagatgtccatctacttctttat 467  Q
    ||||||||||  ||| |||||||||||||| ||| |||||||||||| |  || ||||| |||||||| |||||||||||||| |||| || |||| |||    
T  6172328 ttgactatgcttacagtagatttttcgaatgccttcaacttggtagatagatcagcactgctacgtgatgtgagattgagatgcccatgtatttctctat 6172427  T
Q  468 gggttgagtttctttatg 485  Q
    ||||||||||||||||||    
T  6172428 gggttgagtttctttatg 6172445  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 469
Target Start/End: Complemental strand, 19037114 - 19036983
Alignment:
Q  338 gtgttgagcttgcgatatgaagatggttttttgactatgcccacaatagatttttcgaatccctacaacttggtagacaagtcggcactactacgtgagg 437  Q
    ||||||| | ||||| ||| |||||||| |||| ||||||  ||| |||||||||||||| | | |||||||||||| |  |||||||||||||||||||    
T  19037114 gtgttgaacctgcgacatggagatggttctttggctatgcttacagtagatttttcgaatgctttcaacttggtagatagttcggcactactacgtgagg 19037015  T
Q  438 tgagattgagatgtccatctacttctttatgg 469  Q
    ||||||||||||| | ||||| ||||||||||    
T  19037014 tgagattgagatgcctatctatttctttatgg 19036983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 48582 - 48526
Alignment:
Q  250 taaagatatggctaaatatctcaatgacttttagtttggtattgggattttaggtgg 306  Q
    ||||||| ||||  |||||||||||||||||||||||||| ||||| ||||||||||    
T  48582 taaagatgtggcctaatatctcaatgacttttagtttggtgttggggttttaggtgg 48526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 485
Target Start/End: Complemental strand, 22376411 - 22376357
Alignment:
Q  431 cgtgaggtgagattgagatgtccatctacttctttatgggttgagtttctttatg 485  Q
    |||||||||||| ||| || |||||||| ||||||||| ||||||||||||||||    
T  22376411 cgtgaggtgagaatgaaatttccatctatttctttatgagttgagtttctttatg 22376357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 250 - 485
Target Start/End: Original strand, 9683757 - 9683982
Alignment:
Q  250 taaagatatggctaaatatctcaatgacttttagtttggtattgggattttaggtggagcagaggtcactttgcatagtgctaagagagtgttgagcttg 349  Q
    ||||||||||||||||||||||||||||||| |||||||| | ||| ||| |||||| | ||||| || |||||| || |         |||||| | ||    
T  9683757 taaagatatggctaaatatctcaatgactttcagtttggtgtgggggtttcaggtggggaagaggccattttgcacaggg---------tgttgaacctg 9683847  T
Q  350 cgatatgaagatggttttttgactatgcccacaatagatttttc-gaatccctacaacttggtagacaagtcggcactactacgtgaggtgagattgaga 448  Q
    ||| ||| ||||||||  ||||||||||  | | |||||||||  |||| | | ||||||||||||||| | |  ||| |||||||||||||||||||||    
T  9683848 cgacatggagatggttccttgactatgcttatagtagatttttttgaatgctttcaacttggtagacaaattg--actgctacgtgaggtgagattgaga 9683945  T
Q  449 tgtccatctacttctttatgggttgagtttctttatg 485  Q
    || ||||||| ||||||||| ||| ||||||||||||    
T  9683946 tgcccatctatttctttatgagttaagtttctttatg 9683982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 250 - 485
Target Start/End: Complemental strand, 19280354 - 19280124
Alignment:
Q  250 taaagatatggctaaatatctcaatgacttttagtttggtattgggattttaggtggagcagaggtcactttgcatagtgctaagagagtgttgagcttg 349  Q
    ||||||||| |||||||||||||| || ||| |||||||| | ||  ||| |||||| || |||| || |||||| ||||  || || ||||||| | ||    
T  19280354 taaagatatagctaaatatctcaacgaatttcagtttggtgtgggagtttcaggtggggcggaggccattttgcacagtgtcaacagggtgttgaacctg 19280255  T
Q  350 cgatatgaagatggttttttgactatgcccacaatagatttttcgaatccctacaacttggtagacaagtcggcactactacgtgaggtgagattgagat 449  Q
    ||| ||  ||||||||  || | |||||  ||| |||||||||||||| | | |||||||||||||| |||||   |  |||     |||||||||||||    
T  19280254 cgacattgagatggttccttaattatgcttacagtagatttttcgaatgctttcaacttggtagacaggtcggtgttgatac-----gtgagattgagat 19280160  T
Q  450 gtccatctacttctttatgggttgagtttctttatg 485  Q
    | ||||  | ||||||||||||||||||||||||||    
T  19280159 gcccattcatttctttatgggttgagtttctttatg 19280124  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 485
Target Start/End: Original strand, 18585298 - 18585376
Alignment:
Q  407 ttggtagacaagtcggcactactacgtgaggtgagattgagatgtccatctacttctttatgggttgagtttctttatg 485  Q
    |||||||||||||||||||||| |||| ||| ||   | |||| |||||||| ||||||||| |||||||| |||||||    
T  18585298 ttggtagacaagtcggcactacaacgttaggagaaggttagatttccatctatttctttatgtgttgagttcctttatg 18585376  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 485
Target Start/End: Original strand, 23808207 - 23808248
Alignment:
Q  444 tgagatgtccatctacttctttatgggttgagtttctttatg 485  Q
    ||||||| |||| ||||||||||||||||| |||||||||||    
T  23808207 tgagatgcccatatacttctttatgggttgtgtttctttatg 23808248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 41681164 - 41681124
Alignment:
Q  249 ataaagatatggctaaatatctcaatgacttttagtttggt 289  Q
    |||||||| |||| |||||||||||||||||| ||||||||    
T  41681164 ataaagatgtggcaaaatatctcaatgactttcagtttggt 41681124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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