View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12943_low_23 (Length: 497)

Name: NF12943_low_23
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12943_low_23
NF12943_low_23
[»] chr3 (17 HSPs)
chr3 (290-474)||(23476897-23477081)
chr3 (16-197)||(23433568-23433749)
chr3 (376-482)||(23445731-23445837)
chr3 (381-488)||(23433801-23433908)
chr3 (290-378)||(23497346-23497434)
chr3 (409-488)||(23497438-23497517)
chr3 (69-197)||(23476733-23476861)
chr3 (16-68)||(23461437-23461489)
chr3 (16-65)||(23350148-23350198)
chr3 (446-488)||(23452658-23452700)
chr3 (441-482)||(23350436-23350477)
chr3 (435-488)||(23461755-23461808)
chr3 (18-68)||(23400363-23400413)
chr3 (444-482)||(36000939-36000977)
chr3 (453-482)||(23438383-23438412)
chr3 (70-119)||(23470478-23470527)
chr3 (453-482)||(23470883-23470912)
[»] scaffold0201 (1 HSPs)
scaffold0201 (435-488)||(9927-9980)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 9e-62; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 290 - 474
Target Start/End: Original strand, 23476897 - 23477081
Alignment:
Q  290 atgacttcgcctccaattgatgtaggctgtaactcatcattataactttcctggccatcttcactttcattgttagaccaatcagacccaccagaatatt 389  Q
    |||||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||   |||||||||    
T  23476897 atgacttcacctccaattgctgaaggctgtaactcatcattataattttcctggccatcttcaatttcattgttagaccaataagacctgtcagaatatt 23476996  T
Q  390 gagcactgaattttaatttaccaatttcgctaccatccagatccgactcatgttctaagtcatatacaggtaagaccccacaccc 474  Q
    ||  |||||||||||||||||||||||| |||||| |||||||||||| ||||||||||| |||||||||||||| |||||||||    
T  23476997 gattactgaattttaatttaccaatttccctaccagccagatccgacttatgttctaagttatatacaggtaagatcccacaccc 23477081  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 23433568 - 23433749
Alignment:
Q  16 aaaaaagacctgtccaatatgttgtttcagcacaaagttattgcattacaccgggaatcatgagaattttaaaacaattatttatttgaaggattgaact 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||  | |||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  23433568 aaaaaagacctgtccaatatgttgtttcagcacaaagttattgcaataggcagggaatcatgagaa-tttaaaacaattattcatttgaaggattaaact 23433666  T
Q  116 ctttctgtnnnnnnnnnntcaactaataaggaatttataattagaaagtgggtgaaaaga---ataccgattgaacagcaaggat 197  Q
    |||||| |          ||||||||||| ||||||||||||||||||| ||||||||||   ||||||||||||||||||||||    
T  23433667 ctttctat--aaaaaaaatcaactaataaagaatttataattagaaagtaggtgaaaagattcataccgattgaacagcaaggat 23433749  T

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Target: chr3; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 376 - 482
Target Start/End: Original strand, 23445731 - 23445837
Alignment:
Q  376 cccaccagaatattgagcactgaattttaatttaccaatttcgctaccatccagatccgactcatgttctaagtcatatacaggtaagaccccacacccc 475  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  23445731 cccaccagaatattgagcactgaattttaatttaccaatttccctaccatccagatctgacttatgttctaagttatatacaggtaagaccccacacccc 23445830  T
Q  476 tttatcc 482  Q
    |||||||    
T  23445831 tttatcc 23445837  T

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Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 381 - 488
Target Start/End: Original strand, 23433801 - 23433908
Alignment:
Q  381 cagaatattgagcactgaattttaatttaccaatttcgctaccatccagatccgactcatgttctaagtcatatacaggtaagaccccacacccctttat 480  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| |||||||||| |||||||||||| ||    
T  23433801 cagaatattgagcactgaattttaatttaccaatttccctaccatccagatccgacttatgttctaagttatacacaggtaagatcccacaccccttgat 23433900  T
Q  481 cctctctg 488  Q
    || |||||    
T  23433901 cccctctg 23433908  T

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Target: chr3; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 290 - 378
Target Start/End: Original strand, 23497346 - 23497434
Alignment:
Q  290 atgacttcgcctccaattgatgtaggctgtaactcatcattataactttcctggccatcttcactttcattgttagaccaatcagaccc 378  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  23497346 atgacttcacctccaattgatgtaggttgtaactcatcattataatttccctggccatcttcactttcattgttagaccaatcagaccc 23497434  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 409 - 488
Target Start/End: Original strand, 23497438 - 23497517
Alignment:
Q  409 accaatttcgctaccatccagatccgactcatgttctaagtcatatacaggtaagaccccacacccctttatcctctctg 488  Q
    ||||||||| | ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  23497438 accaatttcccaaccatccagattcgacttatgttctaagttatatacaggtaagaccccacacccctttatcccctctg 23497517  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 23476733 - 23476861
Alignment:
Q  69 ggaatcatgagaattttaaaacaattatttatttgaaggattgaactctttctgtnnnnnnnnnntcaactaataaggaatttataattagaaagtgggt 168  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||| |          | |||||||| |||||||||||||||||||| | |    
T  23476733 ggaatcatgagaattttaaaacaattattcatttgaaggattaaactctttctat---atcaaaataaactaatatggaatttataattagaaagtagat 23476829  T
Q  169 gaaaaga---ataccgattgaacagcaaggat 197  Q
    || ||||   ||||||||||||||||||||||    
T  23476830 gagaagattcataccgattgaacagcaaggat 23476861  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 23461437 - 23461489
Alignment:
Q  16 aaaaaagacctgtccaatatgttgtttcagcacaaagttattgcattacaccg 68  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  23461437 aaaaaagacctgcccaatatgttgtttcagcataaagttattgcaatacaccg 23461489  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 23350148 - 23350198
Alignment:
Q  16 aaaaaagacctgtccaata-tgttgtttcagcacaaagttattgcattaca 65  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| ||||    
T  23350148 aaaaaagacctgtccaataatgttgtttcagcacaaagtaattgcaataca 23350198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 446 - 488
Target Start/End: Original strand, 23452658 - 23452700
Alignment:
Q  446 aagtcatatacaggtaagaccccacacccctttatcctctctg 488  Q
    |||||||||||||||||||| |||||||||||||||| |||||    
T  23452658 aagtcatatacaggtaagactccacacccctttatcccctctg 23452700  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 441 - 482
Target Start/End: Original strand, 23350436 - 23350477
Alignment:
Q  441 gttctaagtcatatacaggtaagaccccacacccctttatcc 482  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  23350436 gttccaagtcatatagaggtaagaccccacacccctttatcc 23350477  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 435 - 488
Target Start/End: Original strand, 23461755 - 23461808
Alignment:
Q  435 actcatgttctaagtcatatacaggtaagaccccacacccctttatcctctctg 488  Q
    ||||| |||||||| |||||||||||| |||||||||||| ||||||| |||||    
T  23461755 actcacgttctaaggcatatacaggtatgaccccacacccttttatcccctctg 23461808  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 23400363 - 23400413
Alignment:
Q  18 aaaagacctgtccaatatgttgtttcagcacaaagttattgcattacaccg 68  Q
    |||||||||| |||||||||| ||| |||||||||||||| || |||||||    
T  23400363 aaaagacctgcccaatatgttttttgagcacaaagttattacaatacaccg 23400413  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 444 - 482
Target Start/End: Original strand, 36000939 - 36000977
Alignment:
Q  444 ctaagtcatatacaggtaagaccccacacccctttatcc 482  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  36000939 ctaagtcatatacagggaagaccccacaaccctttatcc 36000977  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 482
Target Start/End: Original strand, 23438383 - 23438412
Alignment:
Q  453 atacaggtaagaccccacacccctttatcc 482  Q
    ||||||||||||||||||||||||||||||    
T  23438383 atacaggtaagaccccacacccctttatcc 23438412  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 23470478 - 23470527
Alignment:
Q  70 gaatcatgagaattttaaaacaattatttatttgaaggattgaactcttt 119  Q
    ||||||||||||||||||||||||| || | |||||||||| || |||||    
T  23470478 gaatcatgagaattttaaaacaattcttcaattgaaggatttaaatcttt 23470527  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 482
Target Start/End: Original strand, 23470883 - 23470912
Alignment:
Q  453 atacaggtaagaccccacacccctttatcc 482  Q
    ||||||||||||||||||||||||||||||    
T  23470883 atacaggtaagaccccacacccctttatcc 23470912  T

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Target: scaffold0201 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 435 - 488
Target Start/End: Original strand, 9927 - 9980
Alignment:
Q  435 actcatgttctaagtcatatacaggtaagaccccacacccctttatcctctctg 488  Q
    ||||| |||||||| |||||||||||| |||||||||||| ||||||| |||||    
T  9927 actcacgttctaaggcatatacaggtatgaccccacacccttttatcccctctg 9980  T

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