View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12943_low_27 (Length: 443)
Name: NF12943_low_27
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 9 - 427
Target Start/End: Complemental strand, 22558378 - 22557958
Alignment:
| Q |
9 |
gaagaatattatgttatgatattaagattctacgtgatattgtgtaggcaagaaaacctatgcatttgaattgattctactcgtatatgcatattctgtt |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22558378 |
gaagaaaattatgttatgatattaagattctacgtgatattgtgtaggcaagaaaacctatgcatttgaattgattctactcgtatatgcatattctgtt |
22558279 |
T |
|
| Q |
109 |
gtgagtagggtttaaaatcacggtcgtggttgtaacattgtgctgaagtcgtagtccttgataatgccgataattgcggtcaaatgtgaccgataaaagc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22558278 |
gtgagtagggtttaaaatcacggtcgtggttgtaacattgtgctgaagtcgtagtccttgataatgccgataattgcggtcaaatgcaaccgataaaagc |
22558179 |
T |
|
| Q |
209 |
cgcagccacgttgttgtttcagcaacgtcgaaaatcgttatatcgcggcttgaattgcggtcgttgttctttatttagaaccatggtgataagagctaca |
308 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22558178 |
cgcagccgcgttgttgtttcagcaacgtcgaaaatcgttatgtcgcagcttgaattgcggtcgttgatctttatttagaaccatggtgataagagctaca |
22558079 |
T |
|
| Q |
309 |
ttcagttgttgattttgtcagaatttctatataactagggtccagtgaagtagaacagtagttttttaatgctaaattgaagat--ttttatcagtatac |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22558078 |
ttcagttgttgattttgtcagaatttctatataactagggtccagtgaagtagaacagtagttttttaatgctaaattgaagatttttttatcagtatac |
22557979 |
T |
|
| Q |
407 |
agtagaacattacttcaatac |
427 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
22557978 |
agtagaacattacttcaatac |
22557958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University