View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_28 (Length: 438)
Name: NF12943_low_28
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_28 |
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| [»] scaffold0245 (1 HSPs) |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 413
Target Start/End: Original strand, 1300694 - 1301098
Alignment:
| Q |
10 |
aagaatatgctccaaaaccaaagacatgagttgacaaagagcagtattatatattttcttttcttagcactaattcttttacttgcattctaatttagct |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1300694 |
aagaatatgctccaaaaccaaagacatgagttgacaaagagcagtattatatattttcttttcttagcactaattcttttacttgcattctaatttagct |
1300793 |
T |
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| Q |
110 |
aataaagtctattgcagtggttgcaaagaccggaaggaaataaaatattgataaaaaataatgaaactacaatagtaccttaggaacatgagcaattgtg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1300794 |
aataaagtctattgcagtggttgcaaagaccggaaggaaataaaatattgataaaaaataatgaaactacaatagtaccttaggaacatgagcaattgtg |
1300893 |
T |
|
| Q |
210 |
gatcgatgtctaatagaatatccatcctttgcagcctttattatgacaggacgtccatcctcaggatgcttagcctaatccag-nnnnnnnnncatttat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1300894 |
gatcgatgtctaatagaatatccatcctttgcagcctttattatgacaggacgtccatcctcaggatgcttagcctaatccagaaaaaaaaaacatttat |
1300993 |
T |
|
| Q |
309 |
gactaaggaacacaatagcagagagagagattgaaagtttgccttgcacttttgttgtttataaaatattattactaactacaccaagatcgtcttacaa |
408 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1300994 |
gactaaggaacacaataacagagagagagattgaaagtttgccttgcacttttgttgtttataaaatattattactaactacaccaagatcgtcttacaa |
1301093 |
T |
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| Q |
409 |
cacaa |
413 |
Q |
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||||| |
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| T |
1301094 |
cacaa |
1301098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 141 - 287
Target Start/End: Original strand, 1279629 - 1279774
Alignment:
| Q |
141 |
ggaaggaaataaaatattgataaaaaataatgaaactacaatagtaccttaggaacatgagcaattgtggatcgatgtctaatagaatatccatcctttg |
240 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| || ||||||||| ||||| ||| ||||| |
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| T |
1279629 |
ggaaggaaataaaatattgataaaa-ataatgaaactacaatagtaccttaggaacaggagcaattgtctttccatgtctaatggaatagccaagctttg |
1279727 |
T |
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| Q |
241 |
cagcctttattatgacaggacgtccatcctcaggatgcttagcctaa |
287 |
Q |
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| T |
1279728 |
cgacctttaatatgacaggttttccatcgtcaggatgcttaccctaa |
1279774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 141 - 287
Target Start/End: Original strand, 5306 - 5451
Alignment:
| Q |
141 |
ggaaggaaataaaatattgataaaaaataatgaaactacaatagtaccttaggaacatgagcaattgtggatcgatgtctaatagaatatccatcctttg |
240 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| || ||||||||| ||||| ||| ||||| |
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| T |
5306 |
ggaaggaaataaaatattgataaaa-ataatgaaactacaatagtaccttaggaacaggagcaattgtctttccatgtctaatggaatagccaagctttg |
5404 |
T |
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| Q |
241 |
cagcctttattatgacaggacgtccatcctcaggatgcttagcctaa |
287 |
Q |
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| T |
5405 |
cgacctttaatatgacaggttttccatcgtcaggatgcttaccctaa |
5451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 141 - 287
Target Start/End: Original strand, 5637 - 5782
Alignment:
| Q |
141 |
ggaaggaaataaaatattgataaaaaataatgaaactacaatagtaccttaggaacatgagcaattgtggatcgatgtctaatagaatatccatcctttg |
240 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| || ||||||||| ||||| ||| ||||| |
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| T |
5637 |
ggaaggaaataaaatattgataaaa-ataatgaaactacaatagtaccttaggaacaggagcaattgtctttccatgtctaatggaatagccaagctttg |
5735 |
T |
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| Q |
241 |
cagcctttattatgacaggacgtccatcctcaggatgcttagcctaa |
287 |
Q |
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| T |
5736 |
cgacctttaatatgacaggttttccatcgtcaggatgcttaccctaa |
5782 |
T |
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