View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_3 (Length: 715)
Name: NF12943_low_3
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 683; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 1 - 699
Target Start/End: Complemental strand, 39836615 - 39835917
Alignment:
| Q |
1 |
tgccaaagccttatgcctactctgtaatttgcatacaatatatattataactgctaattaagtagtaatatacagagttagtgttgcaaaaccatattat |
100 |
Q |
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| T |
39836615 |
tgccaaagctttatgcctactctgtaatttgcatgcaatatatattataactgctaattaagtagtaatatacagagttagtgttgcaaaaccatattat |
39836516 |
T |
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| Q |
101 |
ggtgataataagtatgtagttaattagattgccggatatatggacaaaaatataccttatgtacgagcaagaatcttatcttatagaaaatcttggattc |
200 |
Q |
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| T |
39836515 |
ggtgataataagtatgtagttaattagattgccggatatatggacaaaaatataccttatgtacgagcaagaatcttatcttatagaaaatcttggattc |
39836416 |
T |
|
| Q |
201 |
attatatttaccttcacatgcattgtctaataatgcaacttgttatgaatagaaacacacatgcagaacagaaacagtctcgggaatccgctaaaatttt |
300 |
Q |
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| T |
39836415 |
attatatttaccttcacatgtattgtctaataatgcaacttgttatgaatagaaacacacatgcagaacagaaacagtctcgggaatccgctaaaatttt |
39836316 |
T |
|
| Q |
301 |
ctcttaagatcttattcttttactatattgacatctcattcaaacaatatgcaatcttcaacactatgaatgcaacctatatatatccctttatcggagc |
400 |
Q |
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| T |
39836315 |
ctcttaagatcttattcttttactatatagacatctcattcaaacaatatgcaatcttcaacactatgaatgcaacctatatatatccctttatcggagc |
39836216 |
T |
|
| Q |
401 |
ttagtttctacatatagaaaattagctcaaaactcttccaatacattacattacttcatcaacattaatcaaaattaattctagctaatcatggacatga |
500 |
Q |
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| T |
39836215 |
ttagtttctacatatagaaaattagctcaaaactcttccaatacattacattacttcatcaacattaatcaaaattaattctagctaatcatggacatga |
39836116 |
T |
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| Q |
501 |
ttacaaggatggtaagtgataaacctgtggtgatattcagcaagagcacatgttgtttgagccactccattatgacattgatacgaagctttggtgcaaa |
600 |
Q |
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| T |
39836115 |
ttacaaggatggtaagtgataaacctgtggtgatattcagcaagagcacatgttgtttgagccactccattatgacattgatacgaagctttggtgcaaa |
39836016 |
T |
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| Q |
601 |
cccaattgtttatgagcttgatgagataacaaatgggacacagattgaaagagcactgattcagctaaggtaccaaccaagtgtaccagctgtgtttat |
699 |
Q |
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| T |
39836015 |
cccaattgtttatgagcttgatgagataacaaatgggacacagattgaaagagcactgattcagctaaggtaccaaccaagtgtaccagctgtgtttat |
39835917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 486 - 648
Target Start/End: Original strand, 44028104 - 44028266
Alignment:
| Q |
486 |
taatcatggacatgattacaaggatggtaagtgataaacctgtggtgatattcagcaagagcacatgttgtttgagccactccattatgacattgatacg |
585 |
Q |
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|||||||||||| | ||||| ||||| |||| || || ||||||||||||||||||||||||||||| ||||||||||| | | || ||||||| |
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| T |
44028104 |
taatcatggacacagtcacaagcatggttggtgaaaagccagtggtgatattcagcaagagcacatgttgcttgagccactcagtgacatcactgatacg |
44028203 |
T |
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| Q |
586 |
aagctttggtgcaaacccaattgtttatgagcttgatgagataacaaatgggacacagattga |
648 |
Q |
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|||||||| || |||||||||||||||||||||||| | || ||||||||| |||||||||| |
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| T |
44028204 |
tagctttggagctaacccaattgtttatgagcttgataaaatcacaaatgggtcacagattga |
44028266 |
T |
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