View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_30 (Length: 429)
Name: NF12943_low_30
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_30 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 349
Target Start/End: Original strand, 10058086 - 10058416
Alignment:
| Q |
21 |
attgcgccgaaaagtttcgccggaaacagagatg-tgcatcggagatggaaacagagggaagaaaaccaaatcagagaagaaatcaaaaccaaatcgcaa |
119 |
Q |
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||||||||| |||||| ||||||||| |||| || ||| ||| ||||| |||| |||||| |||| |||||||||| |||||||||||||||||| |||| |
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| T |
10058086 |
attgcgccggaaagttccgccggaaatagaggtggtgcgtcgaagatgaaaacggagggaggaaa-ccaaatcagaaaagaaatcaaaaccaaattgcaa |
10058184 |
T |
|
| Q |
120 |
aatcaaccatagctc--tgataccatgttagcataggcaatct---aacatagcattatgagggaagaagagaaacagtac--acagagaagaggaagaa |
212 |
Q |
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|||||||||||||| ||||||||||||| ||||| |||||| | |||||||||| || ||| ||||||||| || || ||| |||| |||||| |
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| T |
10058185 |
gatcaaccatagctctgtgataccatgttaacatagacaatctagcagcatagcattagga-ggaggaagagaaagagcactaacatagaa---gaagaa |
10058280 |
T |
|
| Q |
213 |
cccgcaag-aggctagggtttgattaaccaaaatga-aagcatcatatgtacaaggttatacaagagatatatatactatagaatagaaaaggtctaaag |
310 |
Q |
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|||| ||| |||||||||||| |||||| ||| ||| ||| | |||||||| |||||||| | |||||||||||||||||| | || |||||||| |
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| T |
10058281 |
cccgtaagaaggctagggtttcattaacaaaagtgagcagc-tactatgtacatagttataca--acatatatatactatagaatgggaattgtctaaag |
10058377 |
T |
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| Q |
311 |
tacccttactactaactaataataacaataatatctaac |
349 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |
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| T |
10058378 |
tacccttactactaactaataataacaattatatctaac |
10058416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 46818199 - 46818027
Alignment:
| Q |
21 |
attgcgccgaaaagtttcgccggaaacagagatg-tgcatcggagatggaaacagagggaagaaaaccaaatcagagaagaaatcaaaaccaaatcgcaa |
119 |
Q |
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| T |
46818199 |
attgcgccggaaagttccgccggaaacagaggtggtgcgtcggagatgaaaacgaagggaggaaa-ccaaatcagaaaagaaatcaaaaccaaattgcaa |
46818101 |
T |
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| Q |
120 |
aatcaaccatagctc--tgataccatgttagcataggcaatcta---acatagcattatgagggaagaagagaaa |
189 |
Q |
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| T |
46818100 |
gatcaaccatagctctatgataccatgttaacatagacaatctagctgcatagcattagga-ggaagaagagaaa |
46818027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 10051324 - 10051396
Alignment:
| Q |
278 |
atatatatactatagaatagaaaaggtctaaagtacccttactactaactaataataacaataatatctaaca |
350 |
Q |
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| T |
10051324 |
atatatatactatagaatgggaattgtctaaagtacccttattactaactaataatcacaattatatctaaca |
10051396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 46817940 - 46817883
Alignment:
| Q |
278 |
atatatatactatagaatagaaaaggtctaaagtacccttactactaactaataataa |
335 |
Q |
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| T |
46817940 |
atatatatactatagaatgggaattgtctaaagtacccttactactaactaataataa |
46817883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 46822550 - 46822493
Alignment:
| Q |
278 |
atatatatactatagaatagaaaaggtctaaagtacccttactactaactaataataa |
335 |
Q |
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|||||||||||||||||| | || ||||||||||||||||||||||||||||||||| |
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| T |
46822550 |
atatatatactatagaatgggaattgtctaaagtacccttactactaactaataataa |
46822493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 47633969 - 47634109
Alignment:
| Q |
21 |
attgcgccgaaaagtttcgccggaaacagagatg-tgcatcggagatggaaacagagggaagaaaaccaaatcagagaagaaatcaaaaccaaatcgcaa |
119 |
Q |
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||||||||| |||||| |||||||||||||| || ||| ||||||||| |||| |||||| |||| |||||||||| |||||||||||||||||| |||| |
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| T |
47633969 |
attgcgccggaaagttccgccggaaacagaggtggtgcgtcggagatgaaaacggagggaggaaa-ccaaatcagaaaagaaatcaaaaccaaattgcaa |
47634067 |
T |
|
| Q |
120 |
aatcaaccatagctctgataccatgttagcataggcaatcta |
161 |
Q |
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| T |
47634068 |
gatcaaccatagctctgataccatgttaacatagacaatcta |
47634109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 335
Target Start/End: Original strand, 47940492 - 47940808
Alignment:
| Q |
21 |
attgcgccgaaaagtttcgccggaaacagagatg-tgcatcggagatggaaacagagggaagaaaaccaaatcagagaagaaatcaaaaccaaatcgcaa |
119 |
Q |
| |
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||||||||| |||||| |||||||||||||| || || ||||||||| |||| ||||| |||| |||||||| | |||||||||||||||||| |||| |
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| T |
47940492 |
attgcgccggaaagttccgccggaaacagaggtggtgtgtcggagatgaaaacgaagggaggaaa-ccaaatcaaaaaagaaatcaaaaccaaattgcaa |
47940590 |
T |
|
| Q |
120 |
aatcaaccatagctctgataccatgttagcataggcaatct---aacatagcattatgagggaagaagagaaacagtac--acagagaagaggaagaacc |
214 |
Q |
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|||||||| |||||||||||||||||| ||||| |||||| | |||||||||| || ||||||||||||| || || |||||||| |||||||| |
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| T |
47940591 |
gatcaaccacagctctgataccatgttaacatagacaatctagcagcatagcattagga-ggaagaagagaaagagcactgacagagaa---gaagaacc |
47940686 |
T |
|
| Q |
215 |
cgcaag-aggctagggtttgattaaccaaaatg---aaagcatcatatgtacaaggttatacaagagatatatatactatagaatagaaaaggtctaaag |
310 |
Q |
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|| ||| ||||||||| || |||||| | || ||| | | |||||| |||||||| | |||||||||||||||||| | || |||||||| |
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| T |
47940687 |
cgtaagaaggctaggg-ttcattaacaattgtgaacaaaaactaacctgtacatagttataca--acatatatatactatagaatgggaattgtctaaag |
47940783 |
T |
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| Q |
311 |
tacccttactactaactaataataa |
335 |
Q |
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||||||||||||||||||||||||| |
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| T |
47940784 |
tacccttactactaactaataataa |
47940808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 47634180 - 47634252
Alignment:
| Q |
278 |
atatatatactatagaatagaaaaggtctaaagtacccttactactaactaataataacaataatatctaaca |
350 |
Q |
| |
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|||||||||||||||||| || |||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
47634180 |
atatatatactatagaatgagaattgtctaaagcacccttattactaactaataataacaataatatctaaca |
47634252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 47936144 - 47936201
Alignment:
| Q |
278 |
atatatatactatagaatagaaaaggtctaaagtacccttactactaactaataataa |
335 |
Q |
| |
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|||||||||||||||||| | || ||||||||||||||||||||||||||||||||| |
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| T |
47936144 |
atatatatactatagaatgggaattgtctaaagtacccttactactaactaataataa |
47936201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 11490 - 11551
Alignment:
| Q |
351 |
cacatgagatgagtatcaaagaagacaatacgttaaaaaacttgagagattatgtaaaaact |
412 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11490 |
cacatgagatgagtaccaaagaagacaataggttaaaaaacttgagagattatgtaaaaact |
11551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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