View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12943_low_31 (Length: 410)

Name: NF12943_low_31
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12943_low_31
NF12943_low_31
[»] chr1 (5 HSPs)
chr1 (16-396)||(49547115-49547495)
chr1 (29-195)||(47872526-47872682)
chr1 (65-187)||(33857205-33857328)
chr1 (65-187)||(33923595-33923718)
chr1 (141-202)||(44261669-44261730)
[»] chr3 (3 HSPs)
chr3 (132-247)||(14961756-14961874)
chr3 (364-396)||(42668178-42668210)
chr3 (158-245)||(574404-574492)
[»] chr4 (2 HSPs)
chr4 (159-202)||(55771061-55771104)
chr4 (159-202)||(55835295-55835338)
[»] chr7 (1 HSPs)
chr7 (364-393)||(13858459-13858488)


Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 49547495 - 49547115
Alignment:
Q  16 ctactgtttgtggtaatttagagactaatttgatcaagctttgtgcaattaattgatggattaagttgggtcactctgcactgttggagaactaaactga 115  Q
    ||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547495 ctactgtatgcggtaatttagagactaatttgatcaaactttgtgcaattaattgatggattaagttgggtcactctgcactgttggagaactaaactga 49547396  T
Q  116 tgagtgatgatagaattttttcacgtaatgaactaatgtagtctatatctttggagtattaaaataggggttagaggttcatgcattatatctacttcgg 215  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547395 tgagtgatgatagaattttttcacgtaatgaactaatgtagtttatatctttggagtattaaaataggggttagaggttcatgcattatatctacttcgg 49547296  T
Q  216 aaactaatttccactggtaaaaactgtcttacggccagaaaatattttgaaaacttcacgattgaaaaaacagcaactaagactctgagagtttcgaggg 315  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547295 gaactaatttccacgggtaaaaactgtcttacggccagaaaatattttgaaaacttcacgattgaaaaaacagcaactaagactctgagagtttcgaggg 49547196  T
Q  316 gaggaagagtaggggggaaattggagaaatcttgcacannnnnnnnatagtgtttttgtagataatgataaatgaatgttt 396  Q
    |||| ||||||| |||||||||||||||||||| ||||        |||||||||||||||||||||||||||||||||||    
T  49547195 gagggagagtagaggggaaattggagaaatcttccacattttttttatagtgtttttgtagataatgataaatgaatgttt 49547115  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 195
Target Start/End: Original strand, 47872526 - 47872682
Alignment:
Q  29 taatttagagactaatttgatcaagctttgtgcaattaattgatggattaagttgggtcactctgcactgttggagaactaaactgatgagtgatgatag 128  Q
    ||||||||||||||||||||| ||  ||||  |||||   ||||||||||||||| | ||||||||| ||||| ||||||| |  |||||       |||    
T  47872526 taatttagagactaatttgatgaaattttgcacaatt---tgatggattaagttgtgacactctgcattgttgaagaactacatcgatga-------tag 47872615  T
Q  129 aattttttcacgtaatgaactaatgtagtctatatctttggagtattaaaataggggttagaggttc 195  Q
    || ||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||    
T  47872616 aaatttgtcatgtaatgaactgatggagtctatatctttggagtattaaaataggggttaggggttc 47872682  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 33857205 - 33857328
Alignment:
Q  65 taattgatggattaagttgggtcactctgcactgttggagaactaaa-ctgatgagtgatgatagaattttttcacg---taatgaactaatgtagtcta 160  Q
    ||||||||||||||||||| | ||| ||||| ||||| ||||  ||| || ||   ||||||||||||||||||||    ||||||||| ||| ||||||    
T  33857205 taattgatggattaagttgtgacacactgcattgttgaagaagaaaaactaat---tgatgatagaattttttcacacgttaatgaactgatgaagtcta 33857301  T
Q  161 tatctttggagtattaaaataggggtt 187  Q
    |||||||||||||||||||||||||||    
T  33857302 tatctttggagtattaaaataggggtt 33857328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 33923718 - 33923595
Alignment:
Q  65 taattgatggattaagttgggtcactctgcactgttggagaactaaa-ctgatgagtgatgatagaattttttcacg---taatgaactaatgtagtcta 160  Q
    ||||||||||||||||||| | ||| ||||| ||||| ||||  ||| || ||   ||||||||||||||||||||    ||||||||| ||| ||||||    
T  33923718 taattgatggattaagttgtgacacactgcattgttgaagaagaaaaactaat---tgatgatagaattttttcacacgttaatgaactgatgaagtcta 33923622  T
Q  161 tatctttggagtattaaaataggggtt 187  Q
    |||||||||||||||||||||||||||    
T  33923621 tatctttggagtattaaaataggggtt 33923595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 44261730 - 44261669
Alignment:
Q  141 taatgaactaatgtagtctatatctttggagtattaaaataggggttagaggttcatgcatt 202  Q
    ||||| ||| ||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  44261730 taatggactgatggagtctttatctttggaggattaaaataggggttaggggttcatgcatt 44261669  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 14961756 - 14961874
Alignment:
Q  132 tttttcacgtaatgaactaatgtagtctatatctttggagtattaaaataggggttagaggttcatg---cattatatctacttcggaaactaatttcca 228  Q
    ||||||| ||||| |||| ||| | |||| || ||||||| ||||||||| |||| || ||||||||   |||| ||| | ||| |||||||||| ||||    
T  14961756 tttttcatgtaataaactgatggaatctacatatttggagcattaaaatatgggtcaggggttcatgatgcattttatgtccttgggaaactaatgtcca 14961855  T
Q  229 ctggtaaaaactgtcttac 247  Q
    ||| ||| |||||||||||    
T  14961856 ctgataacaactgtcttac 14961874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 42668210 - 42668178
Alignment:
Q  364 agtgtttttgtagataatgataaatgaatgttt 396  Q
    |||||||||||||||||||||||||||||||||    
T  42668210 agtgtttttgtagataatgataaatgaatgttt 42668178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 245
Target Start/End: Complemental strand, 574492 - 574404
Alignment:
Q  158 ctatatctttggagtattaaaa-taggggttagaggttcatgcattatatctacttcggaaactaatttccactggtaaaaactgtctt 245  Q
    |||||||||||||| ||||||| |||||||| |  || |||||||| ||| | | | |||||||||| | |||| ||||||||||||||    
T  574492 ctatatctttggagaattaaaagtaggggtttggagtgcatgcattttatgtccataggaaactaatgttcacttgtaaaaactgtctt 574404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 55771061 - 55771104
Alignment:
Q  159 tatatctttggagtattaaaataggggttagaggttcatgcatt 202  Q
    |||||||||||||||||||||||| |||| | ||||||||||||    
T  55771061 tatatctttggagtattaaaatagaggtttggggttcatgcatt 55771104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 55835295 - 55835338
Alignment:
Q  159 tatatctttggagtattaaaataggggttagaggttcatgcatt 202  Q
    |||||||||||||||||||||||| |||| | ||||||||||||    
T  55835295 tatatctttggagtattaaaatagaggtttggggttcatgcatt 55835338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 393
Target Start/End: Complemental strand, 13858488 - 13858459
Alignment:
Q  364 agtgtttttgtagataatgataaatgaatg 393  Q
    ||||||||||||||||||||||||||||||    
T  13858488 agtgtttttgtagataatgataaatgaatg 13858459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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