View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12943_low_4 (Length: 672)
Name: NF12943_low_4
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 191 - 656
Target Start/End: Original strand, 2087288 - 2087752
Alignment:
| Q |
191 |
taatggggtggttttggtgtgtttgatgtgggagaggaaaacaatgtttggactgaagttgttgttgattaatttcaatttgaaggaattgaattgatca |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2087288 |
taatggggtggttttggtgtgtttgatgtgggagaggaaatcaatgtttggactgaagttgttgttgattaatttcaatttgaaggaattgaattgatca |
2087387 |
T |
|
| Q |
291 |
tagctaagttgaagttgggacaatgttttgaagggtccattttgtctttattgttttgttgtatgtaattagtgagtggagtatggaattggtgagagtg |
390 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2087388 |
tagctaagttgaagttgtgacaatgttttgaagggtccattttgtctttattgttttgttgtatgtaattagtgagtggagtatggaattggtgagagtg |
2087487 |
T |
|
| Q |
391 |
tgactctaggttgtttctgtctttatgtctataaaactgtcttttctctctctaagaaacttttgtttgtttcttttctaacaaaaacttccaatgaaga |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2087488 |
tgactctaggttgtttctgtctttatgtctataaaactgtcttttctctctctaagaaacttttgtttgtttcttttctaacaaaaacttccaatgaaga |
2087587 |
T |
|
| Q |
491 |
tgttttcttttgtctttacatgaggtggatagggaatcaggctggccttggagtttataatattctctaatttagctagagtccaaacatgccttagcaa |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2087588 |
tgttttcttttgtctttacatgaggtggatagggaatcaggctggccttggagtttataatattctctaatttagctagagtccaaacatgccttagcaa |
2087687 |
T |
|
| Q |
591 |
agacaaacattgcccttggttttgtttcttagtggggagagagtgtgagaaagaatggcaagaaag |
656 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2087688 |
agacaaacattgcccttggttttgtttcttagtgggg-gagagtgtgagaaagaatggcaagaaag |
2087752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 2087107 - 2087225
Alignment:
| Q |
10 |
agaagaacaaaagaagaatttccactgattcaggggaattttattcatgaaccctagaaaaagtacattagaggaattaagaaatggaagaaggaaaagc |
109 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2087107 |
agaagaacaaaagaagaacttccactgattcaggggaaatttattcatgaaccctagaaaaagtacattagaggaattaagaaatggaagaaggaaaagc |
2087206 |
T |
|
| Q |
110 |
ttaatccttgatgggtttt |
128 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2087207 |
ttaatccttgatgggtttt |
2087225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 579 - 627
Target Start/End: Complemental strand, 37312597 - 37312549
Alignment:
| Q |
579 |
atgccttagcaaagacaaacattgcccttggttttgtttcttagtgggg |
627 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||| ||||||||||||| |
|
|
| T |
37312597 |
atgccttagcatagaaaaacattgcccttgtttttatttcttagtgggg |
37312549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 627
Target Start/End: Complemental strand, 26465701 - 26465653
Alignment:
| Q |
579 |
atgccttagcaaagacaaacattgcccttggttttgtttcttagtgggg |
627 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||| ||||||| |
|
|
| T |
26465701 |
atgccttagcaaatacaaacatcgcccttggttttgtttctcagtgggg |
26465653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University