View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12943_low_41 (Length: 342)
Name: NF12943_low_41
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12943_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 115604 - 115301
Alignment:
| Q |
1 |
gcatctcccaaagtggcttatccatgctcagttttgattctgtgcataaatcagacatatactcactgattgctgattcatcatccttatcctcggagac |
100 |
Q |
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| T |
115604 |
gcatctcccaaagtggcttatccatgctcagttttgattctgtgcataaatcagacatatactcactgattgctgattcatcatccttatcctcggagac |
115505 |
T |
|
| Q |
101 |
tgattcgttgttgatgataaagatgtggcggtcgaggtcaattttgattggacgccagtgttcaacacctcgatggtcacgaaccatgaggctagtgaac |
200 |
Q |
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| T |
115504 |
tgattcgttgttgatgataaagatgtggcggtcgaggtcaattttgattggacgccagtgttcaacacctcgatggtcacgaaccatgaggctagtgaac |
115405 |
T |
|
| Q |
201 |
cttggatgttggagcataactgagttttgaatttgggtttttactgaatcaacatcgattggtttcttcaaccctatgacacagtggattatttggttca |
300 |
Q |
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| T |
115404 |
cttggatgttggagcataactgagttttggatttgggtttttactgaatcaacatcgattggtttcttcaaccctatgacacagtggattatttggttca |
115305 |
T |
|
| Q |
301 |
tctc |
304 |
Q |
| |
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|||| |
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| T |
115304 |
tctc |
115301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 63 - 304
Target Start/End: Complemental strand, 14832587 - 14832349
Alignment:
| Q |
63 |
tcactgattgctgattcatcatccttatcctcggagactgattcgttgttgatgataaagatgtggcggtcgaggtcaattttgattggacgccagtgtt |
162 |
Q |
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| T |
14832587 |
tcactgattgctgattcatcctccttgtttgtagagactgaatcgttgatgatga---agattcggcggttgaggtcgattttaattggatgctagtgtt |
14832491 |
T |
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| Q |
163 |
caacacctcgatggtcacgaaccatgaggctagtgaaccttggatgttggagcataactgagttttgaatttgggtttttactgaatcaacatcgattgg |
262 |
Q |
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|||| |||||||||||||| |||||||| || || ||||||||||||||||||||||| ||||| || |||||| | |||||||| |||||||| ||||| |
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| T |
14832490 |
caacgcctcgatggtcacggaccatgagacttgtaaaccttggatgttggagcataacagagttctggatttggttatttactgagtcaacatcaattgg |
14832391 |
T |
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| Q |
263 |
tttcttcaaccctatgacacagtggattatttggttcatctc |
304 |
Q |
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| T |
14832390 |
attcttcagacctatgacacagtggattatttggttcatctc |
14832349 |
T |
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