View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12943_low_46 (Length: 303)

Name: NF12943_low_46
Description: NF12943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12943_low_46
NF12943_low_46
[»] chr8 (9 HSPs)
chr8 (39-285)||(39704869-39705123)
chr8 (43-225)||(39704816-39704994)
chr8 (43-235)||(39704759-39704947)
chr8 (58-231)||(39704717-39704886)
chr8 (43-212)||(39690246-39690423)
chr8 (70-231)||(39690353-39690510)
chr8 (47-160)||(39690363-39690476)
chr8 (119-160)||(39711294-39711335)
chr8 (62-110)||(39711294-39711342)
[»] scaffold0036 (1 HSPs)
scaffold0036 (127-212)||(118197-118281)
[»] chr3 (1 HSPs)
chr3 (163-212)||(14229485-14229534)
[»] chr2 (1 HSPs)
chr2 (107-160)||(38711161-38711214)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 39 - 285
Target Start/End: Original strand, 39704869 - 39705123
Alignment:
Q  39 tcatcaagtgttgctccatcacgctccccaacacaaccaccaacttggaatgctccctcaccaagtgttgctccaacacgctccccaacacaaccaccag 138  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39704869 tcatcaagtgttgctccatcacgctccccaacacaaccaccagcttggaatgctccctcatcaagtgttgctccaacacgctccccaacacaaccaccag 39704968  T
Q  139 cttggaatgctccctcaccaag--ct------tggactgctccggcacactccccagtacaaccgccagcttggaatgctccctcgtcaagtgctgctcc 230  Q
    ||||||||||||||||||||||  ||      |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39704969 cttggaatgctccctcaccaagtgctattgtctggactgctccggcacactccccagtacaatcgccagcttggaatgctccctcgtcaagtgctgctcc 39705068  T
Q  231 aacacaatcgcctcgaaatgctccttcacccaataatgaatatatttccaatgag 285  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39705069 aacacaatcgcctcgaaatgctccttcacccaataatgaatctatttccaatgag 39705123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 43 - 225
Target Start/End: Original strand, 39704816 - 39704994
Alignment:
Q  43 caagtgttgctccatcacgctccccaacacaaccaccaacttggaatgctccctcaccaagtgttgctccaacacgctccccaacacaaccaccagcttg 142  Q
    |||||| ||||||  ||||||||||||||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  39704816 caagtgctgctccggcacgctccccaacacaaccaccggcttggaatgctccctcatcaagtgttgctccatcacgctccccaacacaaccaccagcttg 39704915  T
Q  143 gaatgctccctcaccaagcttggactgctccggcacactccccagtacaaccgccagcttggaatgctccctcgtcaagtgct 225  Q
    ||||||||||||| ||||  |    ||||||  ||| |||||||  |||||| ||||||||||||||||||||  ||||||||    
T  39704916 gaatgctccctcatcaagtgt----tgctccaacacgctccccaacacaaccaccagcttggaatgctccctcaccaagtgct 39704994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 43 - 235
Target Start/End: Original strand, 39704759 - 39704947
Alignment:
Q  43 caagtgttgctccatcacgctccccaacacaaccaccaacttggaatgctccctcaccaagtgttgctccaacacgctccccaacacaaccaccagcttg 142  Q
    |||||| ||||||  ||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||||  |||||||||||||||||||||| |||||    
T  39704759 caagtgctgctccgacacgctccccaacacaatcaccagcttggaattctccctcaccaagtgctgctccggcacgctccccaacacaaccaccggcttg 39704858  T
Q  143 gaatgctccctcaccaagcttggactgctccggcacactccccagtacaaccgccagcttggaatgctccctcgtcaagtgctgctccaacac 235  Q
    ||||||||||||| ||||  |    ||||||  ||| |||||||  |||||| |||||||||||||||||||| ||||||| |||||||||||    
T  39704859 gaatgctccctcatcaagtgt----tgctccatcacgctccccaacacaaccaccagcttggaatgctccctcatcaagtgttgctccaacac 39704947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 39704717 - 39704886
Alignment:
Q  58 cacgctccccaacacaaccaccaacttggaatgctccctcaccaagtgttgctccaacacgctccccaacacaaccaccagcttggaatgctccctcacc 157  Q
    |||||||||||||||||||| |  || | ||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| ||||||||||    
T  39704717 cacgctccccaacacaaccatcggctcgaaatgctccctcaccaagtgctgctccgacacgctccccaacacaatcaccagcttggaattctccctcacc 39704816  T
Q  158 aagcttggactgctccggcacactccccagtacaaccgccagcttggaatgctccctcgtcaagtgctgctcca 231  Q
    |||  ||  |||||||||||| |||||||  |||||| || ||||||||||||||||| ||||||| |||||||    
T  39704817 aag--tg--ctgctccggcacgctccccaacacaaccaccggcttggaatgctccctcatcaagtgttgctcca 39704886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 39690423 - 39690246
Alignment:
Q  43 caagtgttgctccatcacgctccccaacacaaccaccaacttggaatgctccctcaccaagtgttgctccaacacgctccccaacacaaccaccagcttg 142  Q
    |||||| ||||||  | |||||||||||||||||||| |||||||||||| |||||||||||| | ||||| ||||||||||||||||||| ||  ||||    
T  39690423 caagtgctgctccggcgcgctccccaacacaaccaccgacttggaatgcttcctcaccaagtgctactccaccacgctccccaacacaaccgccgacttg 39690324  T
Q  143 gaatgctccctcaccaag--------cttggactgctccggcacactccccagtacaaccgccagcttggaatgctcc 212  Q
    |||||||||| |||||||          |||||||||||||||| ||||||||||||||| || ||||||||||||||    
T  39690323 gaatgctcccccaccaagtgatattatctggactgctccggcacgctccccagtacaaccacctgcttggaatgctcc 39690246  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 231
Target Start/End: Complemental strand, 39690510 - 39690353
Alignment:
Q  70 cacaaccaccaacttggaatgctccctcaccaagtgttgctccaacacgctccccaacacaaccaccagcttggaatgctccctcaccaagcttggactg 169  Q
    ||||||||||  || |||||||||||||||||| ||||||||| |||| |||| ||||||||||||| | ||||||||||||||| |||||  ||  |||    
T  39690510 cacaaccacctgctcggaatgctccctcaccaaatgttgctccgacacactccacaacacaaccaccggtttggaatgctccctcgccaag--tg--ctg 39690415  T
Q  170 ctccggcacactccccagtacaaccgccagcttggaatgctccctcgtcaagtgctgctcca 231  Q
    ||||||| | |||||||  |||||| ||  ||||||||||| ||||  |||||||| |||||    
T  39690414 ctccggcgcgctccccaacacaaccaccgacttggaatgcttcctcaccaagtgctactcca 39690353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 39690476 - 39690363
Alignment:
Q  47 tgttgctccatcacgctccccaacacaaccaccaacttggaatgctccctcaccaagtgttgctccaacacgctccccaacacaaccaccagcttggaat 146  Q
    |||||||||  ||| |||| |||||||||||||   ||||||||||||||| ||||||| ||||||  | ||||||||||||||||||||  ||||||||    
T  39690476 tgttgctccgacacactccacaacacaaccaccggtttggaatgctccctcgccaagtgctgctccggcgcgctccccaacacaaccaccgacttggaat 39690377  T
Q  147 gctccctcaccaag 160  Q
    ||| ||||||||||    
T  39690376 gcttcctcaccaag 39690363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 39711294 - 39711335
Alignment:
Q  119 ctccccaacacaaccaccagcttggaatgctccctcaccaag 160  Q
    ||||||| |||||||||| |||||||||||||| ||||||||    
T  39711294 ctccccagcacaaccaccggcttggaatgctccttcaccaag 39711335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 39711294 - 39711342
Alignment:
Q  62 ctccccaacacaaccaccaacttggaatgctccctcaccaagtgttgct 110  Q
    ||||||| ||||||||||  ||||||||||||| ||||||||| |||||    
T  39711294 ctccccagcacaaccaccggcttggaatgctccttcaccaagttttgct 39711342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 118281 - 118197
Alignment:
Q  127 cacaaccaccagcttggaatgctccctcaccaagcttggactgctccggcacactccccagtacaaccgccagcttggaatgctcc 212  Q
    ||||| |||| |||||||||||||| ||||||||| ||||||| |  ||||||||||| || |||| | ||| |||||||||||||    
T  118281 cacaatcacctgcttggaatgctccttcaccaagc-tggactgatgtggcacactcccaagcacaatcaccaacttggaatgctcc 118197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 14229534 - 14229485
Alignment:
Q  163 tggactgctccggcacactccccagtacaaccgccagcttggaatgctcc 212  Q
    ||||||||| |||| ||||||| || |||||| |||||||||||||||||    
T  14229534 tggactgctgcggcgcactcccaagcacaaccaccagcttggaatgctcc 14229485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 38711214 - 38711161
Alignment:
Q  107 tgctccaacacgctccccaacacaaccaccagcttggaatgctccctcaccaag 160  Q
    ||||||||||| ||||||| ||||| |||| |||||||| ||||| ||||||||    
T  38711214 tgctccaacacactccccatcacaatcacctgcttggaaggctccttcaccaag 38711161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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